Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0620 ATGGAATTGAGTATTGTTTTGGCGATGGTGGCCTTGTTGTTATGGGCAGGAGAAGCAATGGCACAGTCGTCGGATTGTAGCAATGTGTTGATTAGCCTCTCGCCTTGCCTCAATTACATCACTGGCAACTCCTCCATGCCGTCTCCGAGCTGCTGCTCGCAGCTGTCCACCGTCGTCCGCTCGCAACCGCAGTGCCTTTGCCAAGTCCTCAATAACCGCGGCGGCGCCTCTGCGATTGGGGGACTCAATGTCAACCAAACTCTAGCTCTTGCTCTTCCTGGTGTTTGTCGTATTCAGACTCCGCCCATTACCCGTTGTAATGCTGCTTCTCCGACAAACGACATTCCAGCAGAATCACCAAAATCTCCGAGCGAAGAGCCTACAGAGAGAGGATCAAGAAGTGTGCCAACAACCACAGAAGATGGAACATCCAATGGAACTTCAACAATATTGTTGTCCAAAGCTCTTGTCTTCATCTTCCTTCTTGCCGCAACTTTTGCTCCATTAATCCATTGA 516 50.19 MELSIVLAMVALLLWAGEAMAQSSDCSNVLISLSPCLNYITGNSSMPSPSCCSQLSTVVRSQPQCLCQVLNNRGGASAIGGLNVNQTLALALPGVCRIQTPPITRCNAASPTNDIPAESPKSPSEEPTERGSRSVPTTTEDGTSNGTSTILLSKALVFIFLLAATFAPLIH 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7139358 7141395 - ClG42_06g0062000.10 Clacu06g0620 251268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0620 171 MobiDBLite consensus disorder prediction 107 145 - -
Clacu06g0620 171 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 23 105 - -
Clacu06g0620 171 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 14 146 IPR043325 -
Clacu06g0620 171 Gene3D - 23 104 IPR036312 -
Clacu06g0620 171 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Clacu06g0620 171 PRINTS Plant phospholipid transfer protein signature 83 100 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Clacu06g0620 171 PRINTS Plant phospholipid transfer protein signature 25 41 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Clacu06g0620 171 CDD AAI_LTSS 33 98 - -
Clacu06g0620 171 SMART aai_6 26 106 IPR016140 -
Clacu06g0620 171 MobiDBLite consensus disorder prediction 129 145 - -
Clacu06g0620 171 Pfam Probable lipid transfer 17 106 IPR016140 -
Clacu06g0620 171 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 25 107 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0620 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0577 Clacu-Chr5:4857430 Clacu06g0620 Clacu-Chr6:7139358 5.50E-32 wgd
Clacu06g0620 Clacu-Chr6:7139358 Clacu07g0034 Clacu-Chr7:679176 7.10E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77