Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0623 ATGAAAAAAGGGAACGCTAGATTAGGAAATGGGCCATTAAAGACTAAAGAGGACTCGTTTGACTGCAAGCGTGTACATGTACAAGCAAGGAGACTTGATATTTCGATAAAATACAAAGGGAAAAGAGAAAAGAAGGCTCTCTTTGAAGAAGACCCTTGGTTTTTGAGCTTTGATCAAAATTTCCTCTTGACAATGGGCACAGTAGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGACGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAGTTATTGTTTCAGTGCCATTTGCTTTTGTGAACGGCAAACCTCAATCAGTTTTCGTTGGAGAAACAGCGGTTGATGCCATTACCATCAAGAACACCACCGATGAATCAGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCTGAAAACTCATTTACGCTCTCTCTAATGGAGCCCCCAGCTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCGTTGGAGGATAGAATGATCCATCCGGATGAGTCTCTTACTATATGGCTGTCTTGCAAACCAAAGGAAATTGGTTTGCACACAACAGTTGTGCATTTTGATCTCGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTTGGCTTCTAGGAAGCCATATTCAAGAGATAGGAGAAGGAGGCATGAGGCAGTAGATTCGTATATTCCTGGCTCACGTCCTACTAGAACGCAAGGTCGGGGATTCAAAAATTTCCTTCTCCAATATGAAATCCCTAGTAGAATTAGAGATGAACTTAGCAGAAAGGAGATCCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTCCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTATGATATGGAGCGTGTTACTATGAGAAGAAAGGGACATAACTTTTTGTCCCTCGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTATATCCTTGCCAAGATGCCTTTTGGACATACAAATGACTCGGTTCCTGCTTATCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGCTCCAGAATTTCACATTAACCACAGAGATGACAATCTGTATAATGTCCAGTTTACCTACAACAGAATTAACATGAGAAGGTTCTATCAGGCTGTTGATGCTGCAGAAAGTTTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATATATCAAGACTACTCCACTGGTGCCTATAACTCAAAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGTGCGCCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAAACTTTGGTGGAAGCTATCCTCCAACTCTACACAACACAAAAGAATGCTCGGATACTTGTTTGCGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAGCTTCTCAGTCAGGAGAGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTAAATGCAAGCACACGACAATATGAGGAAATCAAGCCTGACCACCTTCGCTACTGCTTCTTTGATGAACACATTTTCAGGTGTCCTCCACGCAATGCCCTAGTCCACTATAGGATTGTCGTTTCAACTTATATGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCCATAATTCCAGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTGCATCTTCCTTCTACATTGTTCTATGGTGGGGAACTAATTGCATGTAAAGATGAGAGAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTAATAAAGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGCGAGAAGGCAACAATCCATCATGGTTTAACCGAATTGAGGTAAGCAAGGTGGTTGAGATTATAAGAAAACTGACTGATGGTGGAAATCTGAGTGAGGAAAATATCGGGGTCATAACGCCGTATCGACAACAAGTGCTCAAAATAAGGAAAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTTGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACACAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTGAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATATCTCTTCTGGTCATAATTGGCAACCCCCATATAATCAATCAGGATATGTATTGGAACAAGCTGTTATGGCAGTGTTTTGACAAAGATTCATATCAAGGTTGTCCCCTTCCTGAAAGGCAGGACCCCACAGACGAGGAACAACCCTGCAATAACGAAGAGGGACAAAGTTCAGGATTTGGAGCAGGCCAGAATCCAGAGCAGCCGGAGCTAGCACTGGCACCGGAAACGGAATTTTCTGAACCAGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAAGTAA 2850 41.44 MKKGNARLGNGPLKTKEDSFDCKRVHVQARRLDISIKYKGKREKKALFEEDPWFLSFDQNFLLTMGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPVIVSVPFAFVNGKPQSVFVGETAVDAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPAPNADIESVQAFLESFSLEDRMIHPDESLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSLASRKPYSRDRRRRHEAVDSYIPGSRPTRTQGRGFKNFLLQYEIPSRIRDELSRKEIPSAVREGLKRDTYIPYFMTLLNMEEIQLEEDMRAYDMERVTMRRKGHNFLSLEVPGLAERRPSLVHGDYILAKMPFGHTNDSVPAYQGYIHHVEADEVFLKFAPEFHINHRDDNLYNVQFTYNRINMRRFYQAVDAAESLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTQKNARILVCAPSNSAADHILEKLLSQESVEIRDNDVFRLNASTRQYEEIKPDHLRYCFFDEHIFRCPPRNALVHYRIVVSTYMSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDERSLLTDTADILQVLPNKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDGGNLSEENIGVITPYRQQVLKIRKALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVIIGNPHIINQDMYWNKLLWQCFDKDSYQGCPLPERQDPTDEEQPCNNEEGQSSGFGAGQNPEQPELALAPETEFSEPVVDEAEWSDGWK 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7147262 7152194 - ClG42_06g0062300.10 Clacu06g0623 251271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0623 949 Pfam AAA domain 577 651 IPR041677 GO:0004386(InterPro)
Clacu06g0623 949 Pfam AAA domain 463 562 IPR041677 GO:0004386(InterPro)
Clacu06g0623 949 Pfam Helicase MOV-10, beta-barrel domain 330 415 IPR049080 -
Clacu06g0623 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 878 IPR027417 -
Clacu06g0623 949 CDD SF1_C_Upf1 689 881 IPR047187 -
Clacu06g0623 949 MobiDBLite consensus disorder prediction 905 919 - -
Clacu06g0623 949 PANTHER DNA2/NAM7 HELICASE FAMILY 220 907 IPR045055 GO:0005829(PANTHER)|GO:0035194(PANTHER)|GO:0043186(PANTHER)
Clacu06g0623 949 Gene3D - 381 674 IPR027417 -
Clacu06g0623 949 MobiDBLite consensus disorder prediction 241 264 - -
Clacu06g0623 949 FunFam Probable RNA helicase SDE3 412 557 - -
Clacu06g0623 949 CDD DEXXQc_Helz-like 464 688 IPR026122 GO:0003723(InterPro)|GO:0032574(InterPro)
Clacu06g0623 949 Pfam AAA domain 659 865 IPR041679 -
Clacu06g0623 949 Gene3D - 687 891 IPR027417 -
Clacu06g0623 949 MobiDBLite consensus disorder prediction 891 949 - -
Clacu06g0623 949 FunFam Probable RNA helicase SDE3 688 890 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0623 K18422 - - csv:101209925 1659.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0623 Clacu-Chr6:7147262 Clacu10g1701 Clacu-Chr10:30497027 4.60E-35 dispersed
Clacu06g0623 Clacu-Chr6:7147262 Clacu10g0199 Clacu-Chr10:2352937 3.90E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34