Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0654 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTGGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCCTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCGACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACCACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1161 44.44 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7554218 7558630 + ClG42_06g0065400.10 Clacu06g0654 251302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0654 386 Gene3D - 14 99 - -
Clacu06g0654 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Clacu06g0654 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 383 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu06g0654 386 Pfam Magnesium transporter MRS2-like 40 229 - -
Clacu06g0654 386 Pfam Magnesium transporter MRS2-like 266 313 - -
Clacu06g0654 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Clacu06g0654 386 Coils Coil 187 214 - -
Clacu06g0654 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
Clacu06g0654 386 Gene3D Magnesium transport protein CorA, transmembrane region 104 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0654 K16075 - - csv:101203841 688.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0026 Clacu-Chr2:304551 Clacu06g0654 Clacu-Chr6:7554218 2.30E-73 dispersed
Clacu06g0654 Clacu-Chr6:7554218 Clacu10g1283 Clacu-Chr10:25696533 3.80E-89 dispersed
Clacu06g0654 Clacu-Chr6:7554218 Clacu07g0056 Clacu-Chr7:921929 2.80E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Clacu06g0654 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Clacu07g0056 . 780 1151 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Clacu02g0739 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Clacu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Clacu05g1105 . 1 177 MRS2 Gene Family AT3G58970 71.3 8.3e-64 241.5
Clacu08g1201 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Clacu10g1283 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Clacu06g0654 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Clacu07g0056 . 780 1113 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Clacu10g1283 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Clacu06g0654 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Clacu07g0056 . 815 1073 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Clacu01g1466 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.5e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58