Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0654 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTGGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCCTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCGACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACCACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1161 44.44 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGLVGS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7554218 7558630 + ClG42_06g0065400.10 Clacu06g0654 251302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0654 386 Gene3D - 14 99 - -
Clacu06g0654 386 FunFam Magnesium transporter MRS2-1 16 99 - -
Clacu06g0654 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 383 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu06g0654 386 Pfam Magnesium transporter MRS2-like 40 229 - -
Clacu06g0654 386 Pfam Magnesium transporter MRS2-like 266 313 - -
Clacu06g0654 386 CDD Mrs2_Mfm1p-like 28 383 IPR039204 -
Clacu06g0654 386 Coils Coil 187 214 - -
Clacu06g0654 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
Clacu06g0654 386 Gene3D Magnesium transport protein CorA, transmembrane region 104 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0026 Clacu-Chr2:304551 Clacu06g0654 Clacu-Chr6:7554218 2.30E-73 dispersed
Clacu06g0654 Clacu-Chr6:7554218 Clacu10g1283 Clacu-Chr10:25696533 3.80E-89 dispersed
Clacu06g0654 Clacu-Chr6:7554218 Clacu07g0056 Clacu-Chr7:921929 2.80E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0654 K16075 - csv:101203841 688.337