Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0672 ATGGAAAATCCAGTAGGCGCGGTTCGCTCGGCACTTGTCTTAAGCTTCCTTCCAAGACCCTCAGCACAAGAAAGGTGGAGAAGGAGAAGTTACATTTGCAGGAACGAACGCAGTCTTTGCAAGTGGATGATCATCGACTTTCAGTTTGTACCAATGATTCTTGGGGAAATAGGAAGCTTAAGGCTTAGTACAGTCTTTATTTGCGTTCTAGATAGATTTCAATCAACTGAAGTTTCAGCTTGTGGCCACAAGATAAAGGACATTGGTTGGAGAATGGGGAGTCTATCTTATGAATTGGAATTTATTGACTTTCCTGATGAAGAAATAAAATGGACAAAGCCATTTCAAAAACCACCTGCAGCCTTTGGTATTCCTTCAACTGGGCCAAAAGGGCAGTTGATGGTGCGTCCTCAGTTTCCACAAGTTTTTCGTGAAAAACAATTATCTGATGTTAGTACCAATTCTCAGCTAGAGGTGACTGTTGTTGTGAATGATGTCTGGAAGGTTGGGGATTTAGTTGATTGGTGGAAGGATAACTGTTATTGGTCTGGCAAAATAATTGCCATATTGGGGGATGAGGAGGTCAAGGTTGAGCTGCTCCCCCCACCATTAGGTGAAGGATTGGCTTATCATGCCTCCTCCAAGGATTTGCGGCCATCCTTGGACTGGTCTCCCGAATCTGGTTGGATGGTCCCTAATATGAAGGTGAATGGAAGTACTCAATGTGCTCGGGTGCTTAACAATGGAAGTGTAGATTTGAGAACCCAGAACGTGAGTGAAGGAAATGGAAGTGAACCCCCAGATGGAAAATCAAATGCATCATTAGCTTCACAGACTAGTTCACGTACTCATGAGCCAGCAAGAAAGTTGAAGCAACTGCTCAGCGACACGGCATCGAAGGAGAAACACAAACACACACCAGAGACAAATTCCGACTCAAACCATGTAAATAATATAGCCAAGAAAACTAGTACGTTGGAGAATGACTCAAGTTCACCTACTGAAAAACTAGATGCATCAACTGGAGTTCGAGGTACAAGAACTGATGCAGATGGATGTAACGACGGTCAATCTGTAACGACAACGGTGCTGGATGTCAGTTTGAATTCCATGCACCATGGTTCCTTAGAAGATGCTATTTCGGACTTGGAAGAGCTGATAAACAGGATTAAATGGATCAAACAAATTTTGGATGGTGGAATGGCTTTGCCAAATGCTTCAGGATCTCCATGGAAATATCTGGAACACCGACCCTCATCTACACCAAGATGA 1272 43.47 MENPVGAVRSALVLSFLPRPSAQERWRRRSYICRNERSLCKWMIIDFQFVPMILGEIGSLRLSTVFICVLDRFQSTEVSACGHKIKDIGWRMGSLSYELEFIDFPDEEIKWTKPFQKPPAAFGIPSTGPKGQLMVRPQFPQVFREKQLSDVSTNSQLEVTVVVNDVWKVGDLVDWWKDNCYWSGKIIAILGDEEVKVELLPPPLGEGLAYHASSKDLRPSLDWSPESGWMVPNMKVNGSTQCARVLNNGSVDLRTQNVSEGNGSEPPDGKSNASLASQTSSRTHEPARKLKQLLSDTASKEKHKHTPETNSDSNHVNNIAKKTSTLENDSSSPTEKLDASTGVRGTRTDADGCNDGQSVTTTVLDVSLNSMHHGSLEDAISDLEELINRIKWIKQILDGGMALPNASGSPWKYLEHRPSSTPR 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7753080 7759538 + ClG42_06g0067200.10 Clacu06g0672 251320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0672 423 MobiDBLite consensus disorder prediction 311 341 - -
Clacu06g0672 423 MobiDBLite consensus disorder prediction 284 310 - -
Clacu06g0672 423 MobiDBLite consensus disorder prediction 254 354 - -
Clacu06g0672 423 MobiDBLite consensus disorder prediction 254 283 - -
Clacu06g0672 423 SMART agenet_At_2 165 225 IPR014002 -
Clacu06g0672 423 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 83 421 - -
Clacu06g0672 423 MobiDBLite consensus disorder prediction 404 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0672 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g629 . Blo12g00362 Bda03g00847 . Bpe04g00801 . Bma04g00747 . Cmo08g01075 . . . . . . . . . . . . . . . Cla06g00641 Cam06g0686 Cec06g0688 Cco06g0695 Clacu06g0672 . Cre06g1431 . . . . . . Chy05g00346 . . . . . . . . . . . . Cma08g01102 . Car08g00976 . . Cpe17g00180 Bhi12g01653 . . Lac12g2204 Hepe03g0259 . Lcy13g0345 . . . . . . . Lsi09g01258 . . Cme05g00537
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010419 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 0 1 1 1 1 1 1 1 1 2 32