Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0677 ATGAGTTATAGAAGGGAGCACCGTTCTTCTAGATCTGCTCTCTTTGATGACCTTGAGGAGGGTGGTCTCAGGACTAGCTCTTCCGTTGAAATTAAAGAGCATGACAATGATAAAGCCCTCCATACTTTGGAAGATAGAGTTTCTATTCTCAAGAGGTTGACAGGTGATATTCACGAAGAAGTGGAGAGTCATAATCATTTACTTGACAGAATGGGAAATGGCATGGATGCGTCAAGGGGTATAATGTCAAGAACCATGGATCGATTCAAGATGGTTTTCGAGCAAAAATCAAAGTGGAGAACTTGTAGACTTGCGTTGTATTTTGTGTTGTCCTTTCTACTACTTTTCTATCTCATCAGTCGGTTGGGCTTTCCGGCCACCGGCCCAATATCAACCACCGTTGACGGCAGTGGAAGAGATCATGACGACGACGAAGACGAGCCAAATGGAGGCGGCGTGGTGGTCGGAAACCGCCGATCGAGAGGACGGCCACCGGGATCGAAAAACAAACCAAAATCTCCAATCATCGTCACGAGCGACAACCCTCACGCGCTTCGCACGCACGTGATCGAGATCATCGTAGGAGCCGACGTCGTCGGCAGCATAAAGCAATTCTCCTGCCGCCGACAACGTGGGGTTTGTGTTCTCAGTGGCAGCGGTACGGTTGTGGACGTAACTCTCCGGCAATCCGCCGGTTCTGCCGCCGTGATCCAACTTCACGGCCGCTTCGATATTCTATCTCTAAGTGGGTCTTTTCTTCCCGGTCGAGCCCCTCCCTGTTCGACCGGGCTGACCGTGTACTTGTCGGGCGGTGAGGGGCAGGTGATTGGAGGGACGGTGGTGGGCCCATTGTTGGCAGCTGGGCCTATAATTTTGATAGCTGCTACTTTTGCTAGTGCTACTTATGAGAGATTGCCTTTACAAGACGACCATAATAATCAAGAAAGAGAGATTTCTCCGGCCACCACGGGCGGCGGAGAAGTGGAGGAGCCGCCGCAGTTTACTCGGATGGCAACTTCAATTTACGACTTGATGTCACCAAATGATCATGATGGAGTTGATGGGTATGGTTGGGCTCATGAGAGACCATCTTTTGTTTAA 1101 50.23 MSYRREHRSSRSALFDDLEEGGLRTSSSVEIKEHDNDKALHTLEDRVSILKRLTGDIHEEVESHNHLLDRMGNGMDASRGIMSRTMDRFKMVFEQKSKWRTCRLALYFVLSFLLLFYLISRLGFPATGPISTTVDGSGRDHDDDEDEPNGGGVVVGNRRSRGRPPGSKNKPKSPIIVTSDNPHALRTHVIEIIVGADVVGSIKQFSCRRQRGVCVLSGSGTVVDVTLRQSAGSAAVIQLHGRFDILSLSGSFLPGRAPPCSTGLTVYLSGGEGQVIGGTVVGPLLAAGPIILIAATFASATYERLPLQDDHNNQEREISPATTGGGEVEEPPQFTRMATSIYDLMSPNDHDGVDGYGWAHERPSFV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7814494 7823581 - ClG42_06g0067700.10 Clacu06g0677 251325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0677 366 FunFam AT-hook motif nuclear-localized protein 185 313 - -
Clacu06g0677 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 183 310 - -
Clacu06g0677 366 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 30 92 IPR000727 -
Clacu06g0677 366 Gene3D - 37 100 - -
Clacu06g0677 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 140 318 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu06g0677 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 186 297 IPR005175 -
Clacu06g0677 366 CDD DUF296 186 297 IPR005175 -
Clacu06g0677 366 FunFam bet1-like SNARE 1-1 37 101 - -
Clacu06g0677 366 MobiDBLite consensus disorder prediction 130 178 - -
Clacu06g0677 366 CDD SNARE_Bet1 33 90 IPR039899 -
Clacu06g0677 366 Gene3D - 185 316 - -
Clacu06g0677 366 SUPERFAMILY SNARE fusion complex 29 92 - -
Clacu06g0677 366 ProSiteProfiles PPC domain profile profile. 182 321 IPR005175 -
Clacu06g0677 366 MobiDBLite consensus disorder prediction 307 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0677 Clacu-Chr6:7814494 Clacu07g0338 Clacu-Chr7:3843198 2.20E-54 dispersed
Clacu05g0508 Clacu-Chr5:4214245 Clacu06g0677 Clacu-Chr6:7814494 8.10E-57 wgd
Clacu06g0677 Clacu-Chr6:7814494 Clacu07g0081 Clacu-Chr7:1213516 1.70E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0677 - - - 0.0