Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0692 ATGAATTCTTCATTCTTTCACTCCCAAAACGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGGCAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCCGGCAGCCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTAGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTGAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 51.93 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINGNSLPFNENDSGEMLLHSLISEAAVYPPENSPRQPPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7996865 7997563 + ClG42_06g0069200.10 Clacu06g0692 251340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0692 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 MobiDBLite consensus disorder prediction 59 91 - -
Clacu06g0692 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 PANTHER DNA-BINDING DOMAIN 64 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu06g0692 232 MobiDBLite consensus disorder prediction 67 87 - -
Clacu06g0692 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Clacu06g0692 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Clacu06g0692 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0692 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2424 Clacu-Chr1:34820221 Clacu06g0692 Clacu-Chr6:7996865 3.80E-28 dispersed
Clacu01g2425 Clacu-Chr1:34821095 Clacu06g0692 Clacu-Chr6:7996865 7.40E-26 dispersed
Clacu05g0487 Clacu-Chr5:4045675 Clacu06g0692 Clacu-Chr6:7996865 3.50E-66 dispersed
Clacu06g0692 Clacu-Chr6:7996865 Clacu07g0091 Clacu-Chr7:1322399 1.40E-41 dispersed
Clacu06g0689 Clacu-Chr6:7957702 Clacu06g0692 Clacu-Chr6:7996865 6.50E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47876 PF00847 AP2 6.00E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0692 K14516 - csv:101206564 401.364