Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0701 ATGAGCCAACAAGTGGGAGTGCTAAATGCACTCGACATTGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCCGGAATGGGTTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCCATCGTCACTAAACTCCTCGGCCGTATCTATTACCATATTCCAAATTCCCCCAGACCCGGCTCCCTCCCCCCCAACATCGCCGCCGCCGTCAACGGCGTCGCCTTCTGCGGCACCCTCAGCGGCCAACTCTTCTTCGGCTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTCTACGGCATTACCCTCATTCTCATGGTCGTCTGTTCCATCGCCTCCGGCCTCTCCTTCGGCAACTCCCCAAAAGCCGTCATCGCCACCCTCTGTTTCTTCCGTTTCTGGCTCGGCTTCGGAATCGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCCTTCATCGCCGCGGTTTTTGCAATGCAAGGCTTCGGAATTTTAGGGGGAGGAATCGTCGCTTTAATCGTCTCTTCCGCTTTCAACAACCGCTTCCCAGCACCACCGTACATGGACAATCCCAACCGCCCCACAATACCGGAGGCCGATTACGTGTGGCGAATCGTCTTAATGTTCGGCGCAATTCCAGCCGCGTTAACTTATTACTGGCGGATGAAAATGCCAGAGACGGCGAGATACACCGCCTTAGTAGCCCAAAATGCAAAACAAGCCGCCGCCGACATGTCGAAAGTGCTGCAAGTGCAACTCGAATTAGCCGAACATGAAAAAACCATGATCGAACCAAATGAAAATCAAAACCGTTTCGGTTTATTCTCTGGCGAATTTGCGAAACGTCATGGGCTCCACTTAATTGGAACCACCACCACGTGGTTTCTGTTAGACATAGCGTTTTACAGCCAAAATCTCTTCCAGAAAGACATTTTCACCGCCATTGAATGGCTTCCATCGGCGGCGACGATGAGCGAATTAGAAGAATGCTTCAAAATCGCACGTGCTCAGACACTAATTGCCCTTTGCGGGACAGTTCCAGGTTACTGGTTCACGGTGGCGCTCATCGATTACTTGGGGAGATTTTTTATTCAATTGATGGGATTCATAATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCTTACAATCATTGGAAGGAGAAGCCTCACAGAATCGGGTTCGTGGTGATGTATTCGTTGACGTTTTTCTTTGCGAATTTCGGGCCGAATTCGACGACGTTTATAGTGCCGGCGGAGATATTTCCGGCGAGGTTGAGGTCGACATGTCATGGGATATCGGCGGCGGCGGGAAAAGCAGGGGCAATAGTGGGAGCGTTTGGGTTTTTATATGCAGCGCAGAGTAAGGATCCGAAACTGACGGATCCGGGCTACCCGACGGGGATCGGAGTGAAGAATGCTTTGATTGTGTTGGGATGTGTAAATTTCTTGGGGGCATTGTTTACTCTGTTAGTGCCGGAATCGAAAGGGAAGTCATTGGAGGAGCTGACAGGGGAGAATGACGGGAAGGACAGGAATGGGAATACCATTGCAAATATACCTACCGATGTAAATGTCTAA 1614 51.05 MSQQVGVLNALDIAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNSPRPGSLPPNIAAAVNGVAFCGTLSGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFGNSPKAVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVSSAFNNRFPAPPYMDNPNRPTIPEADYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAQNAKQAAADMSKVLQVQLELAEHEKTMIEPNENQNRFGLFSGEFAKRHGLHLIGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPSAATMSELEECFKIARAQTLIALCGTVPGYWFTVALIDYLGRFFIQLMGFIMMTIFMFALAFPYNHWKEKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPKLTDPGYPTGIGVKNALIVLGCVNFLGALFTLLVPESKGKSLEELTGENDGKDRNGNTIANIPTDVNV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8185682 8187295 + ClG42_06g0070100.10 Clacu06g0701 251349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0701 537 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Clacu06g0701 537 Gene3D MFS general substrate transporter like domains 272 531 IPR036259 -
Clacu06g0701 537 MobiDBLite consensus disorder prediction 513 537 - -
Clacu06g0701 537 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 508 IPR020846 GO:0022857(InterPro)
Clacu06g0701 537 FunFam Inorganic phosphate transporter 1-6 19 529 - -
Clacu06g0701 537 NCBIfam phosphate:H+ symporter 10 517 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Clacu06g0701 537 Pfam Sugar (and other) transporter 25 514 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu06g0701 537 SUPERFAMILY MFS general substrate transporter 11 514 IPR036259 -
Clacu06g0701 537 CDD MFS_PhT 24 507 - -
Clacu06g0701 537 MobiDBLite consensus disorder prediction 521 537 - -
Clacu06g0701 537 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0485 Clacu-Chr5:4028377 Clacu06g0701 Clacu-Chr6:8185682 2.80E-255 dispersed
Clacu05g1023 Clacu-Chr5:9044423 Clacu06g0701 Clacu-Chr6:8185682 3.10E-182 dispersed
Clacu06g0701 Clacu-Chr6:8185682 Clacu07g0111 Clacu-Chr7:1569448 3.10E-238 dispersed
Clacu05g0483 Clacu-Chr5:4012247 Clacu06g0701 Clacu-Chr6:8185682 2.10E-231 wgd
Clacu06g0701 Clacu-Chr6:8185682 Clacu07g0092 Clacu-Chr7:1336078 3.80E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0701 K08176 - csv:101212412 981.859