Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0711 ATGAAGACAGAGTGTTCCTCTTCTTCACTGCTGCTTCTTCTTCACCCGAAATCGCGGGCCGTACATTTCCTTACTCTCTTCTCTAGGGTTTCGCTTCGCTTCGCTCCGCTTCTCATTGCTTTCCTGCTGTTTTTTCTCGGACAAGTTGTACGAAAATCACATTATCTAACCTACTGGAGACATACTGCTCAGTATATGTATATTTGCCGTACTACAACGTACTGGGTGAACTATGTCATATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACTAGTGAAGATGTACCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTACATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACCGAAGACGAGGCTCGGTTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGACGGCCATATGAAATTATCAGATTTCGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCAACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGATTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGCAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTTGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAACTGAAGAAGAAGACCGCAAAATCTAAAAGACCTTCCATCAAATCACTTTTTGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCTGAGAAACTGATGAGCGCCAATGAGAAGCATTCATAA 1860 41.61 MKTECSSSSLLLLLHPKSRAVHFLTLFSRVSLRFAPLLIAFLLFFLGQVVRKSHYLTYWRHTAQYMYICRTTTYWVNYVISKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKTAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKLMSANEKHS 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8302975 8310469 + ClG42_06g0071100.10 Clacu06g0711 251359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0711 619 SMART serkin_6 187 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 FunFam Non-specific serine/threonine protein kinase 158 270 - -
Clacu06g0711 619 Gene3D Transferase(Phosphotransferase) domain 1 271 342 - -
Clacu06g0711 619 Gene3D Transferase(Phosphotransferase) domain 1 381 506 - -
Clacu06g0711 619 FunFam Non-specific serine/threonine protein kinase 271 338 - -
Clacu06g0711 619 SUPERFAMILY Protein kinase-like (PK-like) 162 539 IPR011009 -
Clacu06g0711 619 CDD STKc_NDR_like 185 550 - -
Clacu06g0711 619 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524(InterPro)
Clacu06g0711 619 Pfam Protein kinase C terminal domain 505 549 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 PANTHER SERINE/THREONINE-PROTEIN KINASE 98 553 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu06g0711 619 SMART pkinase_C_6 487 551 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 MobiDBLite consensus disorder prediction 85 114 - -
Clacu06g0711 619 ProSiteProfiles AGC-kinase C-terminal domain profile. 487 559 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 Coils Coil 136 170 - -
Clacu06g0711 619 CDD MobB_NDR_LATS-like 121 182 - -
Clacu06g0711 619 FunFam Non-specific serine/threonine protein kinase 385 504 - -
Clacu06g0711 619 MobiDBLite consensus disorder prediction 90 114 - -
Clacu06g0711 619 Pfam Protein kinase domain 189 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 Pfam Protein kinase domain 383 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 ProSiteProfiles Protein kinase domain profile. 187 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0711 619 Gene3D Phosphorylase Kinase; domain 1 157 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2622 Clacu-Chr1:36375331 Clacu06g0711 Clacu-Chr6:8302975 1.40E-220 dispersed
Clacu04g1346 Clacu-Chr4:27372354 Clacu06g0711 Clacu-Chr6:8302975 5.20E-72 dispersed
Clacu05g1967 Clacu-Chr5:28808871 Clacu06g0711 Clacu-Chr6:8302975 1.20E-183 dispersed
Clacu06g0711 Clacu-Chr6:8302975 Clacu09g0792 Clacu-Chr9:7112060 1.40E-242 dispersed
Clacu06g0711 Clacu-Chr6:8302975 Clacu03g1579 Clacu-Chr3:29358800 2.10E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73635 PF00069 Pkinase 1.30E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0711 K08790 - csv:101205120 1080.47