Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0749 ATGCCGCGGTTGCCGCCAGTGCCACATTGCTGGTCTCACTCTCGTTCAACCGTACGCTCCTCGCTGTCGTGGACATTCCTCGCCGTGACTAGCTTCGACGACCACCGCCGTCTCACACAAGCGCCCTCAAGCTCGCCGGCAGTTTTCTCTATCTCTATCTCTATCTCTATTTCTCTCTTCGATTCTTCCTCTACCCTTGACCTCTCTCTTTCTCTCTCTCTTCTGTCCTGCAACTTGAGCGCTGTATTTGATAGGCTCTCCATGGGTGCAGAACCAGTGCAGTCTATGTCTTCTCAAAACAAAAGGCTAAAGAGGAAGAAAACCCATAAAGACCCAGAATTGGAACGTCTCGACTCACTCCCGTGGAACTCATCAATTCCTAATGATGACACTTTATCTGCATTCATTGGTTCCAATGATCTGGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAAGCTGAGTATGGCTTGGTAATTCCCGAACCTGATACAATGAAACACAAGTTGATTCCAAAGGCCAGTGGAAATTCAAGGAAGGGTGAGCAAAACAATGCTGATAACTGTGGGGATGCATCGCGAGATAGTGGTGATAGTATTAATAAGGAAGTGGCTGGGCACAATGTGAATATGAGAACTAGCCAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAAGGTCATTCATGAAGTCCCAACTGCTGAGGAAGTTGTGGCTGAAGATATAGGTGGCAGTGATAATGATGGGATTGAGACAGAGATTGGAAATGAAATGGATGATGGCGATCCTTTGGAGACCGGGAAGAAGCGACAAAAGAAAGAAAAAGAAACAAAGAACCATGGAATTGAGAAAGAAATCAGGGATGACGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACCCATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCTTTGACCTCTGCAAGTTCTCAAAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAATTGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACGTTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAATCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAGCTCGACATGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTGTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGAATAATGCATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAGAAACGGAGGAAAATGGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2814 43.43 MPRLPPVPHCWSHSRSTVRSSLSWTFLAVTSFDDHRRLTQAPSSSPAVFSISISISISLFDSSSTLDLSLSLSLLSCNLSAVFDRLSMGAEPVQSMSSQNKRLKRKKTHKDPELERLDSLPWNSSIPNDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKGEQNNADNCGDASRDSGDSINKEVAGHNVNMRTSQKGKKEKKKKKKKKKVIHEVPTAEEVVAEDIGGSDNDGIETEIGNEMDDGDPLETGKKRQKKEKETKNHGIEKEIRDDVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTHGSAENLQNAENSLTSASSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQLGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYVLSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKSGSIQLKKLQQELDMLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQNNASVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKRKEEKKRLRDQRRNKRKQMKGKI 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8741744 8762340 - ClG42_06g0074900.10 Clacu06g0749 251397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0749 937 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 552 IPR014001 -
Clacu06g0749 937 Gene3D - 579 823 IPR027417 -
Clacu06g0749 937 SMART ultradead3 323 565 IPR014001 -
Clacu06g0749 937 Pfam Helicase conserved C-terminal domain 602 709 IPR001650 -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 216 230 - -
Clacu06g0749 937 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 475 483 IPR000629 -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 264 283 - -
Clacu06g0749 937 CDD DEADc_DDX24 315 578 - -
Clacu06g0749 937 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 589 757 IPR001650 -
Clacu06g0749 937 Gene3D - 267 554 IPR027417 -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 897 937 - -
Clacu06g0749 937 Coils Coil 894 932 - -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 169 283 - -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 177 195 - -
Clacu06g0749 937 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 268 935 IPR050079 -
Clacu06g0749 937 CDD SF2_C_DEAD 590 719 - -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 93 122 - -
Clacu06g0749 937 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 304 332 IPR014014 GO:0003724(InterPro)
Clacu06g0749 937 Pfam DEAD/DEAH box helicase 328 535 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu06g0749 937 SMART helicmild6 629 710 IPR001650 -
Clacu06g0749 937 MobiDBLite consensus disorder prediction 908 937 - -
Clacu06g0749 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 725 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0749 K14805 - - csv:101209958 1476.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0749 Clacu-Chr6:8741744 Clacu09g1053 Clacu-Chr9:9985924 2.20E-53 dispersed
Clacu06g0749 Clacu-Chr6:8741744 Clacu10g0348 Clacu-Chr10:4400481 9.80E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31