Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0789 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCTCAAAGAAGAGACCTCTGAAATTCGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGATTAGGCTGGAAAGTGATGATATGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCTAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTGGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATTACTTCTTCTGCAGATTCGTGGTGA 1326 46.23 MAALSKWHSLSLFALALVFFVTIALVLKEETSEIRTVLATEFQSSSNSSMAIRLESDDMEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSADSW 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9323202 9331627 - ClG42_06g0078900.10 Clacu06g0789 251437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0789 441 SUPERFAMILY Pectin lyase-like 77 417 IPR011050 -
Clacu06g0789 441 Gene3D - 100 440 IPR012334 -
Clacu06g0789 441 PANTHER PECTATE LYASE 18-RELATED 18 438 IPR045032 GO:0030570(InterPro)
Clacu06g0789 441 FunFam Pectate lyase 100 441 - -
Clacu06g0789 441 SMART amb_all 175 372 IPR002022 -
Clacu06g0789 441 Pfam Pectate lyase 187 364 IPR002022 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 420 441 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Clacu06g0789 441 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2323 Clacu-Chr5:31579650 Clacu06g0789 Clacu-Chr6:9323202 5.60E-155 dispersed
Clacu06g0789 Clacu-Chr6:9323202 Clacu09g1989 Clacu-Chr9:34755578 2.10E-168 dispersed
Clacu05g0400 Clacu-Chr5:3446645 Clacu06g0789 Clacu-Chr6:9323202 2.00E-214 wgd
Clacu06g0789 Clacu-Chr6:9323202 Clacu07g0161 Clacu-Chr7:2073726 3.40E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0789 K01728 - csv:101217580 843.958