Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0805 ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGGTTGTTTGGGACGACCATCTCACTGTTGCTCAGAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCACTTTTGTGAATTCTTACAACTATCCATGGAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCCCAATCCATTTTTCAGGGGTGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGGTTGGATCCAAAATCAACCTTGGTAA 1014 40.34 MWIVRGIFVGLILMMIIFVRGNEGQSYKRVGVKKLAWKTVVVDQNGHGNFSTIQAAIDSVPSNNRFWISIHVNPGVYREKVKIPYDKPYIILKGQRKRTTKVVWDDHLTVAQSPTFTSSADNIVVKSITFVNSYNYPWKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDDQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPLGSTSFITAQGRTNPNDANGFVFKECKVFGSGSAFLGRPWRGYSRVIFYNSNFSNIINPYGWDPWHFVGQENQLTYVENGCYGPGADMSHRVKWEKKLHLNEIRRLTSMSFIDTQGWIQNQPW 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9710664 9715655 + ClG42_06g0080500.10 Clacu06g0805 251453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0805 337 Gene3D - 35 336 IPR012334 -
Clacu06g0805 337 Pfam Pectinesterase 40 328 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu06g0805 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 334 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Clacu06g0805 337 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Clacu06g0805 337 SUPERFAMILY Pectin lyase-like 38 334 IPR011050 -
Clacu06g0805 337 FunFam Pectinesterase 34 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0766 Clacu-Chr5:6470043 Clacu06g0805 Clacu-Chr6:9710664 9.50E-63 dispersed
Clacu06g0805 Clacu-Chr6:9710664 Clacu10g1150 Clacu-Chr10:24093822 1.50E-84 dispersed
Clacu06g0805 Clacu-Chr6:9710664 Clacu08g1655 Clacu-Chr8:26274308 1.10E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0805 - - - 0.0