Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0808 GAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCACCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGACACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTTGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1596 45.36 ELWKDFLADWWRRIKEEGFPVFQDKSIYKVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVFVEEEQCETRTAEEDVRKDSSMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9752638 9757229 + ClG42_06g0080800.10 Clacu06g0808 251456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0808 531 Coils Coil 444 464 - -
Clacu06g0808 531 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 64 435 - -
Clacu06g0808 531 SMART ARID_2 83 173 - -
Clacu06g0808 531 SMART hmgende2 318 387 IPR009071 -
Clacu06g0808 531 Coils Coil 368 388 - -
Clacu06g0808 531 FunFam High mobility group B protein 15 80 192 - -
Clacu06g0808 531 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 319 386 IPR009071 -
Clacu06g0808 531 SUPERFAMILY HMG-box 312 391 IPR036910 -
Clacu06g0808 531 MobiDBLite consensus disorder prediction 299 313 - -
Clacu06g0808 531 MobiDBLite consensus disorder prediction 419 531 - -
Clacu06g0808 531 Pfam HMG (high mobility group) box 319 386 IPR009071 -
Clacu06g0808 531 SUPERFAMILY ARID-like 83 189 IPR036431 GO:0003677(InterPro)
Clacu06g0808 531 CDD HMG-box_AtHMGB9-like 319 385 - -
Clacu06g0808 531 Gene3D - 80 180 IPR036431 GO:0003677(InterPro)
Clacu06g0808 531 MobiDBLite consensus disorder prediction 445 465 - -
Clacu06g0808 531 Gene3D High mobility group box domain 303 398 IPR036910 -
Clacu06g0808 531 SMART bright_3 87 178 IPR001606 GO:0003677(InterPro)
Clacu06g0808 531 CDD ARID_HMGB9-like 88 173 IPR045303 GO:0003677(InterPro)
Clacu06g0808 531 MobiDBLite consensus disorder prediction 290 326 - -
Clacu06g0808 531 MobiDBLite consensus disorder prediction 480 503 - -
Clacu06g0808 531 FunFam High mobility group B protein 15 301 396 - -
Clacu06g0808 531 Pfam ARID/BRIGHT DNA binding domain 89 173 IPR001606 GO:0003677(InterPro)
Clacu06g0808 531 ProSiteProfiles ARID domain profile. 86 177 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1687 Clacu-Chr5:25496009 Clacu06g0808 Clacu-Chr6:9752638 5.00E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47883 PF01388 ARID 2.20E-17 CL0123 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0808 - - - 0.0