Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g0808 | GAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCACCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGACACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTTGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA | 1596 | 45.36 | ELWKDFLADWWRRIKEEGFPVFQDKSIYKVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVFVEEEQCETRTAEEDVRKDSSMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED | 531 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9752638 | 9757229 | + | ClG42_06g0080800.10 | Clacu06g0808 | 251456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g0808 | 531 | Coils | Coil | 444 | 464 | - | - | |
Clacu06g0808 | 531 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 64 | 435 | - | - | |
Clacu06g0808 | 531 | SMART | ARID_2 | 83 | 173 | - | - | |
Clacu06g0808 | 531 | SMART | hmgende2 | 318 | 387 | IPR009071 | - | |
Clacu06g0808 | 531 | Coils | Coil | 368 | 388 | - | - | |
Clacu06g0808 | 531 | FunFam | High mobility group B protein 15 | 80 | 192 | - | - | |
Clacu06g0808 | 531 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 319 | 386 | IPR009071 | - | |
Clacu06g0808 | 531 | SUPERFAMILY | HMG-box | 312 | 391 | IPR036910 | - | |
Clacu06g0808 | 531 | MobiDBLite | consensus disorder prediction | 299 | 313 | - | - | |
Clacu06g0808 | 531 | MobiDBLite | consensus disorder prediction | 419 | 531 | - | - | |
Clacu06g0808 | 531 | Pfam | HMG (high mobility group) box | 319 | 386 | IPR009071 | - | |
Clacu06g0808 | 531 | SUPERFAMILY | ARID-like | 83 | 189 | IPR036431 | GO:0003677(InterPro) | |
Clacu06g0808 | 531 | CDD | HMG-box_AtHMGB9-like | 319 | 385 | - | - | |
Clacu06g0808 | 531 | Gene3D | - | 80 | 180 | IPR036431 | GO:0003677(InterPro) | |
Clacu06g0808 | 531 | MobiDBLite | consensus disorder prediction | 445 | 465 | - | - | |
Clacu06g0808 | 531 | Gene3D | High mobility group box domain | 303 | 398 | IPR036910 | - | |
Clacu06g0808 | 531 | SMART | bright_3 | 87 | 178 | IPR001606 | GO:0003677(InterPro) | |
Clacu06g0808 | 531 | CDD | ARID_HMGB9-like | 88 | 173 | IPR045303 | GO:0003677(InterPro) | |
Clacu06g0808 | 531 | MobiDBLite | consensus disorder prediction | 290 | 326 | - | - | |
Clacu06g0808 | 531 | MobiDBLite | consensus disorder prediction | 480 | 503 | - | - | |
Clacu06g0808 | 531 | FunFam | High mobility group B protein 15 | 301 | 396 | - | - | |
Clacu06g0808 | 531 | Pfam | ARID/BRIGHT DNA binding domain | 89 | 173 | IPR001606 | GO:0003677(InterPro) | |
Clacu06g0808 | 531 | ProSiteProfiles | ARID domain profile. | 86 | 177 | IPR001606 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu05g1687 | Clacu-Chr5:25496009 | Clacu06g0808 | Clacu-Chr6:9752638 | 5.00E-74 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47883 | PF01388 | ARID | 2.20E-17 | CL0123 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g0808 | - | - | - | 0.0 |