Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0813 ATGGGTCTCTCCCCATTTGCCGTTCTTTTGCTCTTGCTCTCTTCCTTGTTACTTTTAAGGTTTTGTTCGGTTTATGGAAGAATTCCGACCACCATTGAAGGGCCGTTTAAGCCTGTGACTGTCCCGCTTGATAAGAGCTTCCGGGGCTTGGCTGAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAAAATGGGGGTCAGTTCGCGCCGGAACAGATTTCTGTCTCTCTCTCTGCAGATTATGACTCCGCTTGGATTTCTTGGATAACAGGGGACTTTCAAATTGGAGACAACATTCAACCACTAGATCCTGAAAGAGTTGCGAGTATTGTCATGTATGGGAAGTTCAGAATGCCAATGAATAACCAAGCCGAGGGTTATTCTCTTATCTACAATCAGCTTTATCCCTTTGAAGGTCTCAGGAACTACACTTCTGGAATTATACACCATGTTCGTCTAACGGGATTGGAGCCTGATACTTTGTACCAATATCAGTGTGGAGACCCTTCAGTTGCAGAAGAATCAAGTGATGTATATTATTTCAGAACGATGCCTGTTTCTGGGCCCAAGAGTTATCCTAATAGAATAGCAGTGGTTGGTGATTTGGGTCTTACATACAACACTACATCAACAGTTAATAATATTTTGAGTAACCATCCCGACCTTGTTCTATTGATTGGGGATGTGAGTTATGCCAACTTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCTTTTCCTGAAACTCCTATTCATGAAACTTACCAGCCACGTTGGGATTATTGGGGAAGGTATATGCAGCCTCTAATATCCAAAGTTCCACTGATGGTGGTGGAAGGGAACCATGAAATAGAACTACAAGCTGAAAATCAAACATTTGCAGCTTATAGTTCCCGATTTGCATTCCCATCCAAAGAGAGTAACTCGTCTTCGATATTTTACTACTCTTTCAATGCAGGTGGCATTCATTTTATAATGCTTGGTGCCTACATTTCATATGACAAATCAAGTGATCAATACAAATGGCTAGAACAAGACCTGGCTAAAGTTGACAGGAAAGTCACTCCATGGTTGATAGCTACATGGCACCCACCCTGGTACAGCACCTACACTGCTCATTATAGAGAAGCAGAGTGCATGAAAGTGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACATAGTCTTCAACGGCCATGTTCATGCCTATGAGAGGTCAAATAGAGTATATAACTACACTTTGGATCGTTGTGGTCCTGTCCATATAACAGTAGGCGACGGAGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCCGGAAACTGTCCAGACCCAGCCTCGACACCTGATGAATACATGGGTGGCTTCTGTGCATTCAATTTCACATCAGGCCCAGCTGAAGGAAAATTCTGCTGGGATCAGCAGCCTGAATATAGTGCATATCGTGAAAGTAGTTTCGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCGTTGTGGACTTGGCATCGAAACCAGGACTCATATAAATCGGTTGGGGATGTAATATACATCGTACGACAACCAGAAATTTGTCTAATTGAGCAGAAGCCACCAGTCTTGAGCACACGCAGAATGGAAAATAGTGAGATAGCAATTGAAAACAAGATTAAGACTAAGAGTTTCGAGGTCGTAAAACTCAAAGAGGCTTTTGAGTTGTTTGGAGTCGAGGTTGATGTTGGATTATATACCGGATTTAGTCCATTCATGTCACCGGTACCGCCATTGTTGAAGCTTGGTGTGGTTGTAGCTGGCACTGTTATTGTTGGGCTTGTGTTTGCCGGAGGGCTGGGTGTGATTGCTCCTCCTGCAGCACTGGAAAATTATCACAAATGA 1896 43.25 MGLSPFAVLLLLLSSLLLLRFCSVYGRIPTTIEGPFKPVTVPLDKSFRGLAEDLPETDPRVQKNGGQFAPEQISVSLSADYDSAWISWITGDFQIGDNIQPLDPERVASIVMYGKFRMPMNNQAEGYSLIYNQLYPFEGLRNYTSGIIHHVRLTGLEPDTLYQYQCGDPSVAEESSDVYYFRTMPVSGPKSYPNRIAVVGDLGLTYNTTSTVNNILSNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPETPIHETYQPRWDYWGRYMQPLISKVPLMVVEGNHEIELQAENQTFAAYSSRFAFPSKESNSSSIFYYSFNAGGIHFIMLGAYISYDKSSDQYKWLEQDLAKVDRKVTPWLIATWHPPWYSTYTAHYREAECMKVAMEDLLYKYKVDIVFNGHVHAYERSNRVYNYTLDRCGPVHITVGDGGNREKMAIEHADEPGNCPDPASTPDEYMGGFCAFNFTSGPAEGKFCWDQQPEYSAYRESSFGHGILEVKNETHALWTWHRNQDSYKSVGDVIYIVRQPEICLIEQKPPVLSTRRMENSEIAIENKIKTKSFEVVKLKEAFELFGVEVDVGLYTGFSPFMSPVPPLLKLGVVVAGTVIVGLVFAGGLGVIAPPAALENYHK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9852937 9858510 - ClG42_06g0081300.10 Clacu06g0813 251461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0813 631 Gene3D - 190 536 IPR029052 -
Clacu06g0813 631 Pfam Iron/zinc purple acid phosphatase-like protein C 473 521 IPR025733 -
Clacu06g0813 631 SUPERFAMILY Purple acid phosphatase, N-terminal domain 49 185 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Clacu06g0813 631 Gene3D - 69 186 - -
Clacu06g0813 631 SUPERFAMILY Metallo-dependent phosphatases 195 516 IPR029052 -
Clacu06g0813 631 FunFam Purple acid phosphatase 190 452 - -
Clacu06g0813 631 Pfam Calcineurin-like phosphoesterase 195 407 IPR004843 GO:0016787(InterPro)
Clacu06g0813 631 CDD MPP_PAPs 190 527 IPR041792 -
Clacu06g0813 631 PANTHER ACID PHOSPHATASE RELATED 6 533 IPR039331 GO:0003993(InterPro)
Clacu06g0813 631 Pfam Purple acid Phosphatase, N-terminal domain 70 183 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0813 K22390 - - csv:101214711 1051.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0399 Clacu-Chr5:3421747 Clacu06g0813 Clacu-Chr6:9852937 3.70E-194 dispersed
Clacu06g0813 Clacu-Chr6:9852937 Clacu08g1627 Clacu-Chr8:26053364 2.70E-71 dispersed
Clacu06g0813 Clacu-Chr6:9852937 Clacu04g1052 Clacu-Chr4:24772221 1.80E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43