Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g0816 | GCTGCTTCTTTCTTTTCATTTCTCTGCAAATTCTTGTGGTTCGATTTGGTTAATATCAAATGGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAACGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAACTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACATTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCAGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA | 1347 | 48.11 | AASFFSFLCKFLWFDLVNIKWSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 448 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9880362 | 9882984 | - | ClG42_06g0081600.10 | Clacu06g0816 | 251464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g0816 | 448 | CDD | EF1_alpha | 22 | 228 | - | - | |
| Clacu06g0816 | 448 | Pfam | Elongation factor Tu GTP binding domain | 22 | 222 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | PRINTS | GTP-binding elongation factor signature | 89 | 99 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | PRINTS | GTP-binding elongation factor signature | 69 | 77 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | PRINTS | GTP-binding elongation factor signature | 105 | 116 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | PRINTS | GTP-binding elongation factor signature | 149 | 158 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | CDD | EF1_alpha_II | 231 | 321 | - | - | |
| Clacu06g0816 | 448 | NCBIfam | translation elongation factor EF-1 subunit alpha | 19 | 434 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Clacu06g0816 | 448 | FunFam | Elongation factor 1-alpha | 230 | 317 | - | - | |
| Clacu06g0816 | 448 | Gene3D | - | 17 | 227 | IPR027417 | - | |
| Clacu06g0816 | 448 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 6 | 231 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 62 | 77 | IPR031157 | - | |
| Clacu06g0816 | 448 | Pfam | GTP-eEF1A C-terminal domain-like | 328 | 428 | IPR054696 | - | |
| Clacu06g0816 | 448 | Pfam | Elongation factor Tu domain 2 | 249 | 314 | IPR004161 | GO:0005525(InterPro) | |
| Clacu06g0816 | 448 | Gene3D | Translation factors | 324 | 431 | - | - | |
| Clacu06g0816 | 448 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 327 | 430 | IPR009001 | - | |
| Clacu06g0816 | 448 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 250 | IPR027417 | - | |
| Clacu06g0816 | 448 | SUPERFAMILY | Translation proteins | 232 | 322 | IPR009000 | - | |
| Clacu06g0816 | 448 | CDD | EF1_alpha_III | 324 | 427 | - | - | |
| Clacu06g0816 | 448 | Gene3D | Translation factors | 230 | 317 | - | - | |
| Clacu06g0816 | 448 | PANTHER | TRANSLATION FACTOR | 19 | 428 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
| Clacu06g0816 | 448 | FunFam | Elongation factor 1-alpha | 324 | 431 | - | - | |
| Clacu06g0816 | 448 | FunFam | Elongation factor 1-alpha | 13 | 227 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g0816 | Clacu-Chr6:9880362 | Clacu09g2074 | Clacu-Chr9:35537636 | 6.00E-243 | dispersed | |
| Clacu06g0816 | Clacu-Chr6:9880362 | Clacu02g2154 | Clacu-Chr2:34702121 | 2.90E-245 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g0816 | K03231 | - | csv:101215193 | 847.04 |