Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0817 ATGCCAGAGATGGAAGGCATTGGAGAGGGGCTTCAATGCGCGGGAGGAAGAATCCAATCCGCCGATTTGCTGCAAGGATTTCGATACGGATCCAAGAATTTGCCATCATCAATGGCGGGCCTATCTCTCAAGTGTGGGGATTGTGGCGCACTGTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCTGTGCTTAATCTTGTCTGTACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCCCCAAAGGTAGATGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTAAACAAGAATATTTTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTTTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTTGAACATGAAAATGATCCGGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAACTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCAGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTGCGGCACCTGTTGTTGAAGAAAAAAAGATCTCATTACCCATTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGCTTGCGATCGTTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCATTTCAAACCCTTCTAACATATGTGGGAAACGTGGTAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATTGAAGGTGGCGAGTTCTTGTTTCTGCCTAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCGACTCTGCTATAAAGAATCCCTTCTTTGGCGTTCTCTGA 1347 45.43 MPEMEGIGEGLQCAGGRIQSADLLQGFRYGSKNLPSSMAGLSLKCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPIRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGVL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9918387 9930976 + ClG42_06g0081700.10 Clacu06g0817 251465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0817 448 Pfam PUB domain 355 426 IPR018997 -
Clacu06g0817 448 SUPERFAMILY UBA-like 134 201 IPR009060 GO:0005515(InterPro)
Clacu06g0817 448 MobiDBLite consensus disorder prediction 118 143 - -
Clacu06g0817 448 MobiDBLite consensus disorder prediction 276 307 - -
Clacu06g0817 448 Gene3D - 340 438 - -
Clacu06g0817 448 MobiDBLite consensus disorder prediction 276 317 - -
Clacu06g0817 448 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 188 IPR015940 -
Clacu06g0817 448 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Clacu06g0817 448 SMART uba_6 149 187 IPR015940 -
Clacu06g0817 448 CDD PUB_UBA_plant 342 448 - -
Clacu06g0817 448 Coils Coil 261 298 - -
Clacu06g0817 448 SUPERFAMILY PUG domain-like 334 444 IPR036339 -
Clacu06g0817 448 Pfam UBA-like domain 149 196 IPR015940 -
Clacu06g0817 448 MobiDBLite consensus disorder prediction 205 245 - -
Clacu06g0817 448 SMART PGNneu 358 421 - -
Clacu06g0817 448 MobiDBLite consensus disorder prediction 220 245 - -
Clacu06g0817 448 Gene3D - 150 194 - -
Clacu06g0817 448 MobiDBLite consensus disorder prediction 123 137 - -
Clacu06g0817 448 CDD UBA_PUB_plant 147 195 - -
Clacu06g0817 448 Coils Coil 218 252 - -
Clacu06g0817 448 ProSitePatterns Zinc finger C2H2 type domain signature. 82 104 IPR013087 -
Clacu06g0817 448 PANTHER F13M7.16 PROTEIN 38 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0817 Clacu-Chr6:9918387 Clacu11g1443 Clacu-Chr11:25430634 1.40E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0817 K24348 - csv:101215434 706.442