Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0874 ATGAGGACTGAAAACCGAAAGAGGAAGCTGCGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAAAACATCATTGAGAGATGAAGATCATTCACAAATTGGGAGGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAATAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAAGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGACCTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTGAAGAGCAACAATATCCACTTTCTCCTCAAAATCTTCTCCTGAGGGACTCCAAACTCCGAAACACCGAATATATATACGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTAAGCATTCTATTCGTGCTGGCATTTATTGGTTCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTGAAAAATGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAATAATGCACCAGCTGCTGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCATATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGGACAGCTTATGGCAGTGGTGTCACTGAAACTGAGAGAGCTATGGAAGGCAGAAATAGTATGCCAATGCTTAATGGCAATGGCATTGGAAATATCCATAAGAGCAATGCGGATGCTTCAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCTGATGTGGATGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTGTATCTATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCAAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTGCTATTACTATGCAAAGGTGCTGACAGCGTCATGTTTGAGAGGCTTGCGAAGAATGCTAGAGAATTTGAAGAGAAAACGAAGGAGCATATCAATGAATATGCCGATGCAGGCCTACGGACCTTGTTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGGCAATGATTGATAAAGTAACAGACCACATTGAGAGGAACTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGATAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTGAGACAAGGAATGAAACAGATCATTATATCTCTGGAGACACCCGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTATCGTCCACAAGATAAATCGGGCAAGATCTCAGATCACTGCATCAAGTGGAAGCTCTGAGGCTTCTGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTGCTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATTTGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACACTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTCTACAACGTTGTGTTCTCGTCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTGTCTGCAAGATACTGCCTTAAGTTTCCTATGTTGTACCAACAAGGTGTGCAGAACGTCCTCTTCAGCTGGGTTAGGATACTTGGCTGGATGTTTAATGGTCTTTGTAGTGCAGTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAATTCCGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCTCTCTCTGTTAGCTACTTCACTTTGGTACAGCATATTTTCATCTGGGCTTCGATCTTTATTTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAACTGCATATCGCGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTCATTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAGTGGATAAGACACGATGGTCAGGGGAAGATAGATGATCCCGAGTTTGTCAATATGGTCAGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAATCATAG 3591 41.38 MRTENRKRKLRLSKIYSFACGKTSLRDEDHSQIGRPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPINFLPKSLFEQFRRVANFYFLIAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDLTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLLSILFVLAFIGSIVFGVVTKDDLKNGRTKRWYLRPDDSTIFFDPNNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERAMEGRNSMPMLNGNGIGNIHKSNADASDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSVSIRELDPRSGRKVKRSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNAREFEEKTKEHINEYADAGLRTLLLAYRELDEEEYKEFDRKFYEAKNSVSAEREAMIDKVTDHIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPEIQALERTGEKDMITKASKESIVHKINRARSQITASSGSSEASALIIDGKSLTYALEDDVKDAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSAVIIFFFCTSGMQHQAFNSEGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLVQHIFIWASIFIWYLFLMIYGAFPASISTTAYRVFLEALAPAGSYWLLLIFVVISTLIPFFVYSALQLNFFPMYHEKIQWIRHDGQGKIDDPEFVNMVRQSSLRPTTVGFTARLAAKIRREKS 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11039642 11046565 - ClG42_06g0087400.10 Clacu06g0874 251522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0874 1196 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Clacu06g0874 1196 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Clacu06g0874 1196 Pfam Cation transport ATPase (P-type) 525 629 - -
Clacu06g0874 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1152 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Clacu06g0874 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1144 IPR023298 -
Clacu06g0874 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Clacu06g0874 1196 SFLD p-type atpase 408 918 IPR044492 -
Clacu06g0874 1196 FunFam Phospholipid-transporting ATPase 545 703 - -
Clacu06g0874 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1145 IPR032630 -
Clacu06g0874 1196 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Clacu06g0874 1196 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Clacu06g0874 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 433 674 IPR023299 GO:0000166(InterPro)
Clacu06g0874 1196 FunFam Phospholipid-transporting ATPase 118 288 - -
Clacu06g0874 1196 Coils Coil 626 646 - -
Clacu06g0874 1196 Gene3D - 699 907 IPR023214 -
Clacu06g0874 1196 NCBIfam phospholipid-translocating P-type ATPase 57 1152 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Clacu06g0874 1196 FunFam Phospholipid-transporting ATPase 703 907 - -
Clacu06g0874 1196 NCBIfam HAD-IC family P-type ATPase 833 949 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g0874 1196 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Clacu06g0874 1196 SUPERFAMILY HAD-like 421 922 IPR036412 -
Clacu06g0874 1196 Gene3D - 114 288 - -
Clacu06g0874 1196 Gene3D - 552 677 IPR023299 GO:0000166(InterPro)
Clacu06g0874 1196 SFLD C1.7: P-type atpase like 408 918 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1201 Clacu-Chr4:26177087 Clacu06g0874 Clacu-Chr6:11039642 0.00E+00 dispersed
Clacu05g2684 Clacu-Chr5:34421051 Clacu06g0874 Clacu-Chr6:11039642 3.70E-275 dispersed
Clacu06g0874 Clacu-Chr6:11039642 Clacu09g0081 Clacu-Chr9:755600 0.00E+00 dispersed
Clacu06g0874 Clacu-Chr6:11039642 Clacu05g2515 Clacu-Chr5:33258268 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0874 K01530 - csv:101205800 2287.3