Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0939 ATGGGTTCAAGGGATAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGCCTTGTTGTCCGGCCTTCGAATAGTGACGGAGGTGGTGGTGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGCCCGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGTTTGCAAGTTCTGTTTAAATTGTGCGGGGATAAGTCAGTTAGCTGAAGAATGCTTTAGTTTCATGGGAGCGCTTTCGTATCTCTGTGTTGCCGCCTGCAAGAAATTAGATCTTGAGGAGGGCATTGGGTATCATTGGTCATTTCAGCAGGATGTGGCTAGCCCACTAGATTTTGCAGAAAACTGTTCTTGTGGACATGTGTTCGTTGCAAGTAGCCATGGTTTTGCTATCTTATTTGCTTCTGTTAAAATTTCTCATGATTTGGGTGGTAACATATTGAACCCACACCGGCAATTATCATCAGAACTTTCTCTCTTGTCTGCATCTTTGCACTCTCTTTTGCGTGTTACACAGAGAGGAGATGCCAACAATGAATGGCAATGGTTGTCAATTTTTTTGGTTGGCCCTTTGCAGTTATATCAGGGAAAATCTTTGGAGATATATGGATATAGAATACATGCAGGTTCAGTTTCTCCAACACGCCGTCGGGATGTTCACCGATATATTTCTGATTTTGATCATTCTGGTGGTCTCGCTCGCAGTCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGATATCGAGATACTTCACCTCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATTTGGAAGAGGTGTTGATGGCCCTGGACTTGCTTCTGGGCCATTTCGTGGGGAACGTAGTAAAAACAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTCTATGTGACAACCTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAATAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGTTATGTTGGTCCATCCCTGCATTCTCCTCCTAGGCGCTTTGCTGCGCACCCAGTTGAACGTTCTCCTGGCAGGACTCTTAGTGAATATAGGTCTCCTCCCCGTAGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGCCGGTATTCCGATCACCTGCGAAGAGACAGGGTGGACTATCTAGAAGACAGCTTCAGAGGAAGATCGAAGTTCGATAGGCCAGTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGATTTCATCACAGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGTCGTTGCTTCCTCAGCGTGGGCGCTGGGCGCGTGAAGTGAGGGAGAGGAGCCGTTCCCCAATCAGAGGTCCCGTCAGATCTCCATTAAGAGTCTCGCTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGTTGAAAGGGAGCGGGATGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGGGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGATTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTTCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 3450 46.43 MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEPGEVPRDPPQYSRLDRYSDDLVCKFCLNCAGISQLAEECFSFMGALSYLCVAACKKLDLEEGIGYHWSFQQDVASPLDFAENCSCGHVFVASSHGFAILFASVKISHDLGGNILNPHRQLSSELSLLSASLHSLLRVTQRGDANNEWQWLSIFLVGPLQLYQGKSLEIYGYRIHAGSVSPTRRRDVHRYISDFDHSGGLARSREFGGGRDLGRYRDTSPHYSRRISGGRPFGRGVDGPGLASGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGYVGPSLHSPPRRFAAHPVERSPGRTLSEYRSPPRSWARDGPREIAAGGLAPPRYESSRYSDHLRRDRVDYLEDSFRGRSKFDRPVPSADWALRDNGRDDFITERKGFERRPPSPPLSLLPQRGRWAREVRERSRSPIRGPVRSPLRVSLRSPLSSGLPPKDFRRDVFVERERDDRRGLGRDRDGALGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSGEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKASHPSRKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12591266 12606919 - ClG42_06g0093900.10 Clacu06g0939 251587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0939 1149 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 760 794 IPR005172 -
Clacu06g0939 1149 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 674 709 IPR005172 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 940 956 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 957 986 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 1 61 - -
Clacu06g0939 1149 Gene3D - 297 338 - -
Clacu06g0939 1149 SMART CXC_2 757 798 IPR033467 -
Clacu06g0939 1149 SMART CXC_2 672 712 IPR033467 -
Clacu06g0939 1149 PANTHER TESMIN/TSO1-RELATED 603 1073 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 605 667 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 333 404 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 936 1001 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 254 270 - -
Clacu06g0939 1149 ProSitePatterns Zinc finger RanBP2-type signature. 311 332 IPR001876 -
Clacu06g0939 1149 SUPERFAMILY Ran binding protein zinc finger-like 299 338 IPR036443 -
Clacu06g0939 1149 SMART zf_4 309 335 IPR001876 -
Clacu06g0939 1149 FunFam FUS RNA-binding protein 298 339 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 451 470 - -
Clacu06g0939 1149 ProSiteProfiles Zinc finger RanBP2 type profile. 307 338 IPR001876 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 609 640 - -
Clacu06g0939 1149 ProSiteProfiles CRC domain profile. 673 797 IPR005172 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 650 667 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 252 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0939 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0939 Clacu-Chr6:12591266 Clacu08g1470 Clacu-Chr8:24725163 7.30E-27 dispersed
Clacu05g0566 Clacu-Chr5:4764579 Clacu06g0939 Clacu-Chr6:12591266 1.90E-29 transposed
Clacu11g0377 Clacu-Chr11:3446831 Clacu06g0939 Clacu-Chr6:12591266 4.00E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1470 . 325 447 CPP Transcription Factor Family AT3G22780 57.6 3.3e-38 157.1
Clacu08g1470 . 297 447 CPP Transcription Factor Family AT4G14770 52.3 1.9e-40 164.5
Clacu11g0377 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.5e-142 501.5
Clacu06g0939 . 589 1103 CPP Transcription Factor Family AT2G20110 50.7 8.6e-127 451.1
Clacu08g1470 . 325 456 CPP Transcription Factor Family AT3G04850 51.5 1.3e-36 151.8
Clacu11g0377 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Clacu06g0939 . 579 1102 CPP Transcription Factor Family AT4G29000 53.3 2.9e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47890 PF03638 TCR 6.90E-12 No_clan Clacu TF