Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0939 ATGGGTTCAAGGGATAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGCCTTGTTGTCCGGCCTTCGAATAGTGACGGAGGTGGTGGTGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGCCCGGTGAGGTTCCCCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGATGATTTGGTTTGCAAGTTCTGTTTAAATTGTGCGGGGATAAGTCAGTTAGCTGAAGAATGCTTTAGTTTCATGGGAGCGCTTTCGTATCTCTGTGTTGCCGCCTGCAAGAAATTAGATCTTGAGGAGGGCATTGGGTATCATTGGTCATTTCAGCAGGATGTGGCTAGCCCACTAGATTTTGCAGAAAACTGTTCTTGTGGACATGTGTTCGTTGCAAGTAGCCATGGTTTTGCTATCTTATTTGCTTCTGTTAAAATTTCTCATGATTTGGGTGGTAACATATTGAACCCACACCGGCAATTATCATCAGAACTTTCTCTCTTGTCTGCATCTTTGCACTCTCTTTTGCGTGTTACACAGAGAGGAGATGCCAACAATGAATGGCAATGGTTGTCAATTTTTTTGGTTGGCCCTTTGCAGTTATATCAGGGAAAATCTTTGGAGATATATGGATATAGAATACATGCAGGTTCAGTTTCTCCAACACGCCGTCGGGATGTTCACCGATATATTTCTGATTTTGATCATTCTGGTGGTCTCGCTCGCAGTCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGATATCGAGATACTTCACCTCATTACAGTCGAAGAATAAGTGGTGGCAGGCCATTTGGAAGAGGTGTTGATGGCCCTGGACTTGCTTCTGGGCCATTTCGTGGGGAACGTAGTAAAAACAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTCTATGTGACAACCTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAATAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGTTATGTTGGTCCATCCCTGCATTCTCCTCCTAGGCGCTTTGCTGCGCACCCAGTTGAACGTTCTCCTGGCAGGACTCTTAGTGAATATAGGTCTCCTCCCCGTAGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGCCTGGCACCTCCAAGGTATGAAAGCAGCCGGTATTCCGATCACCTGCGAAGAGACAGGGTGGACTATCTAGAAGACAGCTTCAGAGGAAGATCGAAGTTCGATAGGCCAGTTCCTTCAGCAGATTGGGCCCTTAGAGACAATGGAAGGGATGATTTCATCACAGAGAGGAAGGGATTTGAAAGAAGGCCACCATCCCCACCACTGTCGTTGCTTCCTCAGCGTGGGCGCTGGGCGCGTGAAGTGAGGGAGAGGAGCCGTTCCCCAATCAGAGGTCCCGTCAGATCTCCATTAAGAGTCTCGCTACGGTCTCCATTAAGTAGTGGCCTTCCACCAAAAGACTTCCGTAGAGATGTTTTCGTTGAAAGGGAGCGGGATGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGGGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGATTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTTCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 3450 46.43 MGSRDKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEPGEVPRDPPQYSRLDRYSDDLVCKFCLNCAGISQLAEECFSFMGALSYLCVAACKKLDLEEGIGYHWSFQQDVASPLDFAENCSCGHVFVASSHGFAILFASVKISHDLGGNILNPHRQLSSELSLLSASLHSLLRVTQRGDANNEWQWLSIFLVGPLQLYQGKSLEIYGYRIHAGSVSPTRRRDVHRYISDFDHSGGLARSREFGGGRDLGRYRDTSPHYSRRISGGRPFGRGVDGPGLASGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGYVGPSLHSPPRRFAAHPVERSPGRTLSEYRSPPRSWARDGPREIAAGGLAPPRYESSRYSDHLRRDRVDYLEDSFRGRSKFDRPVPSADWALRDNGRDDFITERKGFERRPPSPPLSLLPQRGRWAREVRERSRSPIRGPVRSPLRVSLRSPLSSGLPPKDFRRDVFVERERDDRRGLGRDRDGALGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSGEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKASHPSRKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 1149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12591266 12606919 - ClG42_06g0093900.10 Clacu06g0939 251587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0939 1149 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 760 794 IPR005172 -
Clacu06g0939 1149 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 674 709 IPR005172 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 940 956 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 957 986 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 1 61 - -
Clacu06g0939 1149 Gene3D - 297 338 - -
Clacu06g0939 1149 SMART CXC_2 757 798 IPR033467 -
Clacu06g0939 1149 SMART CXC_2 672 712 IPR033467 -
Clacu06g0939 1149 PANTHER TESMIN/TSO1-RELATED 603 1073 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 605 667 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 333 404 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 936 1001 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 254 270 - -
Clacu06g0939 1149 ProSitePatterns Zinc finger RanBP2-type signature. 311 332 IPR001876 -
Clacu06g0939 1149 SUPERFAMILY Ran binding protein zinc finger-like 299 338 IPR036443 -
Clacu06g0939 1149 SMART zf_4 309 335 IPR001876 -
Clacu06g0939 1149 FunFam FUS RNA-binding protein 298 339 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 451 470 - -
Clacu06g0939 1149 ProSiteProfiles Zinc finger RanBP2 type profile. 307 338 IPR001876 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 609 640 - -
Clacu06g0939 1149 ProSiteProfiles CRC domain profile. 673 797 IPR005172 -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 650 667 - -
Clacu06g0939 1149 MobiDBLite consensus disorder prediction 252 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0939 Clacu-Chr6:12591266 Clacu08g1470 Clacu-Chr8:24725163 7.30E-27 dispersed
Clacu05g0566 Clacu-Chr5:4764579 Clacu06g0939 Clacu-Chr6:12591266 1.90E-29 transposed
Clacu11g0377 Clacu-Chr11:3446831 Clacu06g0939 Clacu-Chr6:12591266 4.00E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47890 PF03638 TCR 6.90E-12 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0939 - - - 0.0