Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0971 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGGGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCGCCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTTTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 777 52.77 METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSSSAVESNRKRGKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLFSSSSSASSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13365941 13366717 + ClG42_06g0097100.10 Clacu06g0971 251619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0971 258 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 MobiDBLite consensus disorder prediction 1 63 - -
Clacu06g0971 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 41 203 IPR051032 -
Clacu06g0971 258 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Clacu06g0971 258 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 CDD AP2 62 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 SMART rav1_2 61 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677(InterPro)
Clacu06g0971 258 Pfam AP2 domain 60 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g0971 258 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0971 Clacu-Chr6:13365941 Clacu11g1698 Clacu-Chr11:28226066 2.00E-49 dispersed
Clacu06g0246 Clacu-Chr6:2891275 Clacu06g0971 Clacu-Chr6:13365941 5.10E-34 transposed
Clacu11g0366 Clacu-Chr11:3329865 Clacu06g0971 Clacu-Chr6:13365941 5.70E-49 wgd
Clacu06g0971 Clacu-Chr6:13365941 Clacu09g0180 Clacu-Chr9:1744541 9.60E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47892 PF00847 AP2 2.30E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0971 K09286 - csv:101219745 339.732