Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g0982 ATGGGCAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAACATCCAGATTTCTCCCACTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGACGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCGAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGAGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTCGGGACACCAGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCGAGCATGCGTCAATTCGTCGAGAAATGCTTGGCCCCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGCAAGCCAAAAATTTCAGATTCTCGGGGAGAACTGGACGATTTTGCTTCCACAGCACACCCTTTCCTTGAACAAGAAAAAATATTTAACTCAATTAGTTACAGTATAGAGGCCTCAGATGAATGGAGGTGCCGTACAGTTCAGAAGGAACCGGATGGGATCGAACTTTTTGAGGACAATGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAATATTGTTTTAAGACTTAGGATTGCAGATAAAGACGGACATATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATAGCAGAACTTGATATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACTCGACTGGAAGCCAGGGCCTGCCATTGACGAAACACCCCGTATCTCTTACGATGGTGGCTCTCAAAGCTATAACGTCTCTAATCAACCATCTGTTAATTCTTTAACAGAGAGTAAGCAAAATGGACCAAAACTCTATCAGATTTTAAACTGCAGCACAGAGCAGTTCTTCCTCAAAGCAGATCAGCCTACACAGTCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCCTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGAAAATTACAAGAAAACTGACCAATCAGTTGGATATAACAAAGAAAAAGTACCAGATAACAAAGCCACTGTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCACGGTTCCATCCTATTGTGAAGATAAATTTCCCTCTCAAATCCATTGGGAAATTAGATGGCTATGGAATTGA 1809 39.97 MGKTDSINGFSDLVQHPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCESKPKISDSRGELDDFASTAHPFLEQEKIFNSISYSIEASDEWRCRTVQKEPDGIELFEDNDNDQLENLDNSIKGKIREDGNIVLRLRIADKDGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVLDWKPGPAIDETPRISYDGGSQSYNVSNQPSVNSLTESKQNGPKLYQILNCSTEQFFLKADQPTQSVVESIPKVSSQHYQSNSVLHENQAPSSHSFRQRHSDENYKKTDQSVGYNKEKVPDNKATVIDRTSLRSLLGSRSLSTVPSYCEDKFPSQIHWEIRWLWN 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13991182 13993887 - ClG42_06g0098200.10 Clacu06g0982 251630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g0982 602 MobiDBLite consensus disorder prediction 515 532 - -
Clacu06g0982 602 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0982 602 SMART serkin_6 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0982 602 FunFam probable serine/threonine-protein kinase WNK9 115 294 - -
Clacu06g0982 602 CDD STKc_WNK 30 289 - -
Clacu06g0982 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 549 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu06g0982 602 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g0982 602 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Clacu06g0982 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g0982 602 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Clacu06g0982 602 MobiDBLite consensus disorder prediction 515 553 - -
Clacu06g0982 602 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Clacu06g0982 602 FunFam Probable serine/threonine-protein kinase WNK1 17 113 - -
Clacu06g0982 602 MobiDBLite consensus disorder prediction 533 553 - -
Clacu06g0982 602 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Clacu06g0982 602 Gene3D - 375 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0607 Clacu-Chr6:7007267 Clacu06g0982 Clacu-Chr6:13991182 1.30E-183 dispersed
Clacu06g0982 Clacu-Chr6:13991182 Clacu10g0440 Clacu-Chr10:5489405 3.10E-101 dispersed
Clacu06g0982 Clacu-Chr6:13991182 Clacu03g0309 Clacu-Chr3:3611049 2.20E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73642 PF00069 Pkinase 9.20E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g0982 K08867 - csv:101222641 1045.42