Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1041 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAACAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATATCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACAGGTGAACAACTGAACTCGTCCGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCTTCTACAGTGCGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCCCAAGAACTCCCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCGGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACTGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 3105 44.32 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEISAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVRENASLPDNGFEDYDKSQTTDVPSQELPGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16134393 16151680 - ClG42_06g0104100.10 Clacu06g1041 251689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1041 1034 Coils Coil 799 832 - -
Clacu06g1041 1034 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Clacu06g1041 1034 Gene3D - 5 58 - -
Clacu06g1041 1034 Pfam Myb-like DNA-binding domain 10 70 - -
Clacu06g1041 1034 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Clacu06g1041 1034 Coils Coil 167 187 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 985 1034 - -
Clacu06g1041 1034 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 157 176 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 400 414 - -
Clacu06g1041 1034 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Clacu06g1041 1034 CDD SANT 10 53 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 597 621 - -
Clacu06g1041 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Clacu06g1041 1034 CDD SANT_CDC5_II 55 106 IPR047240 -
Clacu06g1041 1034 Coils Coil 514 534 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 110 150 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 382 421 - -
Clacu06g1041 1034 FunFam CDC5 cell division cycle 5-like 5 59 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 839 884 - -
Clacu06g1041 1034 FunFam CDC5 cell division cycle 5-like 60 120 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 597 612 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 213 234 - -
Clacu06g1041 1034 SMART sant 58 105 IPR001005 -
Clacu06g1041 1034 SMART sant 6 55 IPR001005 -
Clacu06g1041 1034 Gene3D - 59 114 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 991 1021 - -
Clacu06g1041 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Clacu06g1041 1034 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 832 951 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 927 951 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1041 K12860 - - csv:101206265 1758.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1041 Clacu-Chr6:16134393 Clacu10g0735 Clacu-Chr10:10491474 1.10E-10 dispersed
Clacu06g1041 Clacu-Chr6:16134393 Clacu11g0458 Clacu-Chr11:4340560 4.00E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1041 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
Clacu05g1618 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Clacu05g1618 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Clacu06g1041 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47895 PF11831 Myb_Cef 1.80E-58 No_clan Clacu TF