Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1041 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAACAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATATCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACAGGTGAACAACTGAACTCGTCCGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCTTCTACAGTGCGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCCCAAGAACTCCCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCGGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACTGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 3105 44.32 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEISAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVRENASLPDNGFEDYDKSQTTDVPSQELPGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16134393 16151680 - ClG42_06g0104100.10 Clacu06g1041 251689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1041 1034 Coils Coil 799 832 - -
Clacu06g1041 1034 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Clacu06g1041 1034 Gene3D - 5 58 - -
Clacu06g1041 1034 Pfam Myb-like DNA-binding domain 10 70 - -
Clacu06g1041 1034 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Clacu06g1041 1034 Coils Coil 167 187 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 985 1034 - -
Clacu06g1041 1034 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 157 176 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 400 414 - -
Clacu06g1041 1034 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Clacu06g1041 1034 CDD SANT 10 53 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 597 621 - -
Clacu06g1041 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Clacu06g1041 1034 CDD SANT_CDC5_II 55 106 IPR047240 -
Clacu06g1041 1034 Coils Coil 514 534 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 110 150 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 382 421 - -
Clacu06g1041 1034 FunFam CDC5 cell division cycle 5-like 5 59 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 839 884 - -
Clacu06g1041 1034 FunFam CDC5 cell division cycle 5-like 60 120 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 597 612 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 213 234 - -
Clacu06g1041 1034 SMART sant 58 105 IPR001005 -
Clacu06g1041 1034 SMART sant 6 55 IPR001005 -
Clacu06g1041 1034 Gene3D - 59 114 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 991 1021 - -
Clacu06g1041 1034 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Clacu06g1041 1034 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 832 951 - -
Clacu06g1041 1034 MobiDBLite consensus disorder prediction 927 951 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1041 Clacu-Chr6:16134393 Clacu10g0735 Clacu-Chr10:10491474 1.10E-10 dispersed
Clacu06g1041 Clacu-Chr6:16134393 Clacu11g0458 Clacu-Chr11:4340560 4.00E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47895 PF11831 Myb_Cef 1.80E-58 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1041 K12860 - csv:101206265 1758.42