Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1053 ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATACAACAATTCCAAACGATGCAGCAAAACGGTGACGTTTTTGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCCACAACCGTGCATCAAGTCCACGGCTTCAACCCGTTTTCTAATCCGACGATCCTAGACCACCATGACTCGTTTATCTCGCCGCTGCAACCGCCAGCCTCCTATGGCAGTTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTGGTTGTGCTCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCGTCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACGTTGATAGCCGATGTAAGTCTGCTGCCGACGGAGCTGGACGAGCTATCGGTGGATGTCGATGCGTCCGACGAGGACGGGAAGTCTGTGATCAAAGCTTCGTTTTGTTGTGAGGACAGGTCAGATCTTTTGCCACAAATCATCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCAGAGATCACGACGCTCGGCGGCCGCGTAAGAAACGTATTGTTCATCACCAGCGATGACGACTCCTCCAACGACCAACAAGATCAGGCTCAACAACACCAACACCACCAATACAGCATCAGTTCCATTCAAGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGATCTTTCTAG 954 46.86 MKEEGECFEEQLVIQQFQTMQQNGDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDSFISPLQPPASYGSFFNRRNASSLQFPPYDNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKSVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEITTLGGRVRNVLFITSDDDSSNDQQDQAQQHQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17884736 17885842 + ClG42_06g0105300.10 Clacu06g1053 251701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1053 317 Gene3D - 115 175 IPR036638 GO:0046983(InterPro)
Clacu06g1053 317 PANTHER TRANSCRIPTION FACTOR BHLH30 103 305 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1053 317 SMART finulus 126 175 IPR011598 GO:0046983(InterPro)
Clacu06g1053 317 Pfam Helix-loop-helix DNA-binding domain 123 170 IPR011598 GO:0046983(InterPro)
Clacu06g1053 317 MobiDBLite consensus disorder prediction 291 317 - -
Clacu06g1053 317 CDD bHLH_AtAIG1_like 115 194 - -
Clacu06g1053 317 FunFam transcription factor bHLH30 115 178 - -
Clacu06g1053 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 174 IPR036638 GO:0046983(InterPro)
Clacu06g1053 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1053 Clacu-Chr6:17884736 Clacu10g1359 Clacu-Chr10:26655724 1.80E-39 dispersed
Clacu06g1053 Clacu-Chr6:17884736 Clacu05g2500 Clacu-Chr5:33100251 9.20E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47896 PF00010 HLH 2.10E-12 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1053 - - - 0.0