Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1098 ATGGGTTCACCAAAAACTGGACAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGACGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCCAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCACTTGTGTACGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATGATGCAGGCTGCGTTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTAAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCCGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCTAAATATTTATCAGCTGTGGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGCAATAAAGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTGCTGCCATTATCATGTCCGCCATGCTTGGTCTCATCAAATATGATGAAATGTATCATCTTCTCAAAGTCGACAAATTCGATTTCTGCATTTGTATGGCAGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTCGGAATCATGCTTTCGGTGGGACTTGCTTTGTTGAGAGCTCTTCTTTACATGGCAAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAGCCCATGAAATTATGGTTCTTCAACTTGGTTCCCCTGTTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAAGCCGATCCCAACTATGGATCCGTCGAACATGTACTCCTGGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTTGAAATCCGCAAATCATTACAAGCAAATGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCGGATTTCACAAACACAATCGGAAAAGAGAACATTTATTTATCGGTGGATGAGGGAGTGGAAAGGTGCAGAGATTTGGTACCGAAATTAAAGCAAACAGAAACAAGTCCTCGAAGTTCGAACATGACGACAATGGAGCAGCAAGTATAA 1947 43.25 MGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERDAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGMMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALAAIIMSAMLGLIKYDEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHEIMVLQLGSPVYYANSNYIRERIFRWVRDEQADPNYGSVEHVLLELSGVTSIDMTGIETLVEIRKSLQANGIQMGIVNPRIVVMEKMIASDFTNTIGKENIYLSVDEGVERCRDLVPKLKQTETSPRSSNMTTMEQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20639366 20642324 + ClG42_06g0109800.10 Clacu06g1098 251746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1098 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Clacu06g1098 648 PANTHER SULFATE TRANSPORTER 43 623 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu06g1098 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Clacu06g1098 648 Gene3D STAS domain 482 625 IPR036513 -
Clacu06g1098 648 FunFam Sulfate transporter 31 482 624 - -
Clacu06g1098 648 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu06g1098 648 Pfam STAS domain 503 617 IPR002645 -
Clacu06g1098 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Clacu06g1098 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Clacu06g1098 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1098 Clacu-Chr6:20639366 Clacu09g0726 Clacu-Chr9:6321830 2.00E-199 dispersed
Clacu06g1097 Clacu-Chr6:20609162 Clacu06g1098 Clacu-Chr6:20639366 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1098 K17471 - csv:116402148 1155.58