Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1101 ATGAATCCTAAATCCCATTTGAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGTCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTATTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGATTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCGGGCAGCGGTCGACTGTGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCTTCGCCTCCGTCACCGTCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCACCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCTTCTTCCCCATCTACGCCGTCGCAGCCGTCGACACCGTCGTCGCCTTCTTCCCCTTCGACACCGTCGTCGCCTTCTTCCCCTTCGACACCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACAATCCGTCGGCTCCTCCTACGTCCGAGCCCTCACCACCATTGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACACGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACAGCATCACCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCGCCGCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGGCCCCTCCACCAACACCTTCATCTCCAATTCACTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCACCACCACCCTTCTATTAA 2541 55.8 MNPKSHLNPLFHFSLLLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLIFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNDLVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPGQRSTVQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPSGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSQPSTPSSPSSPSTPSSPSSPSTPSQPSTPPSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHNPSAPPTSEPSPPLPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTASPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPAPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20726194 20728734 + ClG42_06g0110100.10 Clacu06g1101 251749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1101 846 MobiDBLite consensus disorder prediction 399 825 - -
Clacu06g1101 846 Pfam Leucine Rich Repeat 174 191 IPR001611 GO:0005515(InterPro)
Clacu06g1101 846 MobiDBLite consensus disorder prediction 409 825 - -
Clacu06g1101 846 SUPERFAMILY L domain-like 88 361 - -
Clacu06g1101 846 Gene3D Ribonuclease Inhibitor 244 374 IPR032675 -
Clacu06g1101 846 Gene3D Ribonuclease Inhibitor 79 243 IPR032675 -
Clacu06g1101 846 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 510 IPR051582 -
Clacu06g1101 846 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Clacu06g1101 846 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Clacu06g1101 846 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515(InterPro)
Clacu06g1101 846 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0351 Clacu-Chr6:4235954 Clacu06g1101 Clacu-Chr6:20726194 6.20E-40 dispersed
Clacu06g1101 Clacu-Chr6:20726194 Clacu11g0343 Clacu-Chr11:3105907 6.80E-14 dispersed
Clacu05g2138 Clacu-Chr5:30094952 Clacu06g1101 Clacu-Chr6:20726194 1.40E-34 transposed
Clacu07g0234 Clacu-Chr7:2774208 Clacu06g1101 Clacu-Chr6:20726194 2.40E-33 transposed
Clacu11g0393 Clacu-Chr11:3618939 Clacu06g1101 Clacu-Chr6:20726194 6.90E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1101 - - - 0.0