Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1126 ATGGCTGCAGTTTTTTACTTTACCACCCGTCTCCAATTTTTCCTAATTTCATTTTCCCTGCTTCTTCTTCTTCTTCATCTTCATTCTGTCCAGTCTGAGCCCACCGCCGACAAGGCAGCTCTTCTCGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCTGGCGTGGGGCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGTAGTCTTTATCTTCAGGACAACGAGCTTTCCGGGGATTTTCCGGTGAGTGTGACTCAGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTCTCACGGGATTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACCTTATCGAAATTCTCTGCTTCATCTTTCGCCGGAAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACGTCAGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCCGCTTTCTTTGCGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTCCGGAAGCGCGAGCGGGGGCAGCCGGCGAAGCCGCCGACTACGGTGGTTACTACTCGATCTGTTCCGGCGGAGGCAGGTACATCGTCTTCGAAAGACGACATCACCGGGGGATCAGTGGAGACAGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGCGTCGGGACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTAGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGATTGGGACAACCGGATGAAAATAGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCACGTGTCGGGAAAGCTCGTCCATGGCAATATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCTTCGACGCCGCCCAACCGGATCGCCGGGTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGTTGTTGGAGCTTCTCACCGGGAAATCACCAAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCAGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGAGGGATTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACGGCCAGACGCCGCCGCAAGAGTCCAGAACCACCCCACACGGAGCTGGCGGACCACCGTAG 1998 52.35 MAAVFYFTTRLQFFLISFSLLLLLLHLHSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDATQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNELSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFFAFILLFLLLFCLRKRERGQPAKPPTTVVTTRSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDEGLRQSSDDPSKGSDGQTPPQESRTTPHGAGGPP 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21347586 21350014 + ClG42_06g0112600.10 Clacu06g1126 251774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1126 665 SUPERFAMILY L domain-like 56 219 - -
Clacu06g1126 665 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 432 636 - -
Clacu06g1126 665 Pfam Leucine Rich Repeat 197 218 IPR001611 GO:0005515(InterPro)
Clacu06g1126 665 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Clacu06g1126 665 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Clacu06g1126 665 Gene3D Phosphorylase Kinase; domain 1 325 431 - -
Clacu06g1126 665 Pfam Protein tyrosine and serine/threonine kinase 361 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1126 665 Gene3D Ribonuclease Inhibitor 192 241 IPR032675 -
Clacu06g1126 665 MobiDBLite consensus disorder prediction 300 331 - -
Clacu06g1126 665 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Clacu06g1126 665 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Clacu06g1126 665 MobiDBLite consensus disorder prediction 626 665 - -
Clacu06g1126 665 PANTHER OS05G0588300 PROTEIN 18 632 IPR050994 -
Clacu06g1126 665 MobiDBLite consensus disorder prediction 305 329 - -
Clacu06g1126 665 MobiDBLite consensus disorder prediction 640 656 - -
Clacu06g1126 665 SUPERFAMILY Protein kinase-like (PK-like) 361 622 IPR011009 -
Clacu06g1126 665 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Clacu06g1126 665 FunFam Probable inactive receptor kinase RLK902 34 192 - -
Clacu06g1126 665 ProSiteProfiles Protein kinase domain profile. 357 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1126 665 FunFam pollen receptor-like kinase 1 327 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1126 Clacu-Chr6:21347586 Clacu10g1925 Clacu-Chr10:32873139 3.20E-91 dispersed
Clacu01g1989 Clacu-Chr1:31821984 Clacu06g1126 Clacu-Chr6:21347586 2.80E-41 transposed
Clacu03g1458 Clacu-Chr3:28125825 Clacu06g1126 Clacu-Chr6:21347586 3.30E-39 transposed
Clacu07g0483 Clacu-Chr7:5942025 Clacu06g1126 Clacu-Chr6:21347586 4.40E-69 transposed
Clacu10g2204 Clacu-Chr10:35105597 Clacu06g1126 Clacu-Chr6:21347586 1.30E-73 transposed
Clacu11g0407 Clacu-Chr11:3813284 Clacu06g1126 Clacu-Chr6:21347586 8.40E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73644 PF00069 Pkinase 5.90E-37 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1126 - - - 0.0