Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1130 CAGAGAAAGGAGGAGAAATCTCAGTTAATTAATGGCTTCTTCAGCATTGGCGTAGTCCTCGAGAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAGAAATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATTCCATCTTCTCAAATGGCGTTGAAATCCCACCATGGATCAAATGATGGTGAGAAAACTAATTTATGGAAAAGGAAAGGAAGAAGGAGAGCAAAAGGACCTTCCATGGAAGGTTTGAAGCAAAAGGAACTTGATCGAAACCTGGAGTTTCCCTCTTCTTCTTGCAAAAGCGTAACATTTCCAAGAAGGCCAGACTTCGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATAATGACCGAGTTGGTCAAACATTACAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTCGATGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATAATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTATTCTCCTTGTATTAAGAAGCCTCAGCAGATTGGGGGCGGTTTGCAAGCATGGCGTGGTTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTCGCTCAAATTTTAAACAAAGACGTGTACTCAAGAACATTGTCTGATGCTGATCGTATTAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACCGAGGAAATGTACGAAGGAAATATCGAATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCTATGGAGGCGTGTAAGATACTCAAAGGACAGAGATACACAAAAGGATTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTATTCAGACTGTTCATGAGAATGCATATGAGGCAGATCCATATGCAAAAGAATTTGGAATCAATATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGCATAAATTTCTCACGCAATGTCCAAGAGAACATCGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAACTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATGTGGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAACGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACCTGGCAAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACGATAATCTTCGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATTGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTCAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCGCTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACACTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTGGCCGCATACAGAGCTCGATTCTACGTAGACCCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGATCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGCTGA 2880 42.33 QRKEEKSQLINGFFSIGVVLEKKKRKKKKEKREMPYMQMEPEEKHVIPSSQMALKSHHGSNDGEKTNLWKRKGRRRAKGPSMEGLKQKELDRNLEFPSSSCKSVTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNIMTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGAATPREREFKVQIKFVTLASMHQLRELLDGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQQIGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDIIQTVHENAYEADPYAKEFGINIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRNVQENIARGFCQQLVQMCQISGMEFNPDPATPIYSARPEQVKKALKFVCGAVYNKHEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSADKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVDPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21472544 21481071 + ClG42_06g0113000.10 Clacu06g1130 251778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1130 959 ProSiteProfiles PAZ domain profile. 314 427 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu06g1130 959 SUPERFAMILY Ribonuclease H-like 593 922 IPR012337 -
Clacu06g1130 959 CDD PAZ_argonaute_like 312 426 - -
Clacu06g1130 959 Pfam Argonaute linker 2 domain 456 499 IPR032472 -
Clacu06g1130 959 CDD Piwi_ago-like 471 920 IPR045246 -
Clacu06g1130 959 MobiDBLite consensus disorder prediction 22 85 - -
Clacu06g1130 959 FunFam Argonaute 10 491 664 - -
Clacu06g1130 959 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 109 928 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Clacu06g1130 959 Pfam Argonaute linker 1 domain 261 311 IPR014811 -
Clacu06g1130 959 FunFam protein argonaute 10-like 670 959 - -
Clacu06g1130 959 Pfam PAZ domain 317 443 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu06g1130 959 SMART PAZ_2_a_3 317 449 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu06g1130 959 SMART Piwi_a_2 601 922 IPR003165 GO:0003676(InterPro)
Clacu06g1130 959 Gene3D - 491 664 - -
Clacu06g1130 959 Pfam Piwi domain 602 920 IPR003165 GO:0003676(InterPro)
Clacu06g1130 959 Pfam Mid domain of argonaute 510 585 IPR032473 -
Clacu06g1130 959 ProSiteProfiles Piwi domain profile. 601 922 IPR003165 GO:0003676(InterPro)
Clacu06g1130 959 SMART DUF1785_2 260 312 IPR014811 -
Clacu06g1130 959 FunFam Protein argonaute-2 306 432 - -
Clacu06g1130 959 Gene3D - 670 959 IPR036397 GO:0003676(InterPro)
Clacu06g1130 959 Pfam N-terminal domain of argonaute 118 251 IPR032474 -
Clacu06g1130 959 Gene3D paz domain 306 431 - -
Clacu06g1130 959 SUPERFAMILY PAZ domain 307 466 IPR036085 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0549 Clacu-Chr5:4594655 Clacu06g1130 Clacu-Chr6:21472544 0.00E+00 dispersed
Clacu05g2598 Clacu-Chr5:33801690 Clacu06g1130 Clacu-Chr6:21472544 1.10E-167 dispersed
Clacu06g1130 Clacu-Chr6:21472544 Clacu09g1114 Clacu-Chr9:10672214 4.50E-131 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1130 K11593 - csv:101213206 1806.57