Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1154 ATGTTAAGTTCTAATTTCAGAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGTTTTTGGGAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGAAAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1008 41.87 MLSSNFRNSTPNLSSISGCESFGFLGRRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEENSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21950169 21954867 + ClG42_06g0115400.10 Clacu06g1154 251802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1154 335 Pfam RING-variant domain 80 130 IPR011016 GO:0008270(InterPro)
Clacu06g1154 335 MobiDBLite consensus disorder prediction 35 72 - -
Clacu06g1154 335 CDD RING_CH-C4HC3_MARCH 80 131 - -
Clacu06g1154 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 144 IPR013083 -
Clacu06g1154 335 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 41 334 - -
Clacu06g1154 335 SMART ringv_2 79 131 IPR011016 GO:0008270(InterPro)
Clacu06g1154 335 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Clacu06g1154 335 MobiDBLite consensus disorder prediction 37 61 - -
Clacu06g1154 335 ProSiteProfiles Zinc finger RING-CH-type profile. 72 137 IPR011016 GO:0008270(InterPro)
Clacu06g1154 335 SUPERFAMILY RING/U-box 78 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1977 Clacu-Chr1:31752316 Clacu06g1154 Clacu-Chr6:21950169 9.80E-54 dispersed
Clacu06g1154 Clacu-Chr6:21950169 Clacu07g1477 Clacu-Chr7:29333541 2.50E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1154 - - - 0.0