Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g1155 | ATGGAGACCATTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAACAACTCTCCAGAGATGGCAGTCAGTACAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTTAAGCTCCGGCGCTTTATCATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCACCACTCTCTGTTACAGACAACGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCCTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAGGATTGCTCTGAAGTACTCAAGGACATGGCTAATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTTCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCCGAAGAGTCAGTGCTCTGTTTTCCAGACTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCCAAACTCGTTTGTGTTACTCTCTTTGCAGTTCACTGTGCTGCATGCTTCTATTATCTTCTTGCTGCTCGTTATCGTGACCCGAAAAATACGTGGATTGGAGCATCTATGGAGAACTTTCTGGAACAAAGTTTGTGGATCAGATATGTCACTTCCGTTTACTGGTCTATCACTACCCTAACCACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACGGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACCAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCAATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATTCTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTTCTCAAGAATGGAGTTGAACAGCCTGTTGGAGAGGCTAAAACTGGCGATCTTTGTGGAGAGATTGGGGTGTTATGTTATAGACCACAACTGTTTACTGTTCGTACAAAGCGTTTGAGTCAGCTGCTGCGTCTGAATCGGACGGCTTTTCTAAATATTGTTCAATCTAATGTCGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTGGCTAGAGGCAGAATGGACCTACCACTAAGTCTTTGCTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAACGAATCAGACAATACCGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCTGATCCCAATAGTAGAGATTCAGATGGGAGTGTGCCATTATGGGAGGCAATACTAGGTGGCCATGAGGCGGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATTGGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGATGTTACGAGTGCCAGGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAGGACAACATTGAGATTGTCAAGTTTCTTCTCAAACAAGGTGCTGATATTGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCTGACCAACAGGGACATGAAGAAATTAAAATCCTCTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCAATTCCTGTACCGGAGAAGCAGACAGGGATTCGCTTCCTTGGAAGATTTACAAGTGAGCCTATGATTCGTCCTCAACCTCAGGAAGCAAATGACGGTTCATGGCCGGGTCAATCACGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCTGTGGACAGAACTCTCGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTAGCGGGAAGTTGGTGCTGCTTCCAGAAAGCTACAACAAGCTGCTCGAGATTGGTGTCAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGATGGTGATCATCTTATTTTTGTCAGTGATGGAAGGACCTCATAA | 2628 | 43.57 | METIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKRIALKYSRTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEQSLWIRYVTSVYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEAVVQLLIDNGANLRLGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKILFQTTKESKTQSVLAIPVPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTCGQNSRTNPARVIISCPEIGEVSGKLVLLPESYNKLLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTS | 875 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 21956845 | 21961914 | - | ClG42_06g0115500.10 | Clacu06g1155 | 251803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g1155 | 875 | FunFam | Potassium channel SKOR | 63 | 301 | - | - | |
| Clacu06g1155 | 875 | MobiDBLite | consensus disorder prediction | 745 | 765 | - | - | |
| Clacu06g1155 | 875 | Gene3D | - | 63 | 301 | - | - | |
| Clacu06g1155 | 875 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 657 | 689 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 560 | 592 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | Pfam | Ankyrin repeats (3 copies) | 532 | 621 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | Pfam | Ankyrin repeats (3 copies) | 631 | 710 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 285 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Clacu06g1155 | 875 | PANTHER | POTASSIUM CHANNEL AKT1 | 22 | 867 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Clacu06g1155 | 875 | CDD | CAP_ED | 380 | 485 | IPR000595 | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 593 | 625 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | Pfam | KHA, dimerisation domain of potassium ion channel | 806 | 868 | IPR021789 | - | |
| Clacu06g1155 | 875 | Gene3D | - | 528 | 712 | IPR036770 | - | |
| Clacu06g1155 | 875 | SUPERFAMILY | cAMP-binding domain-like | 305 | 500 | IPR018490 | - | |
| Clacu06g1155 | 875 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
| Clacu06g1155 | 875 | PRINTS | Ankyrin repeat signature | 673 | 687 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | PRINTS | Ankyrin repeat signature | 561 | 576 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SMART | ANK_2a | 593 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SMART | ANK_2a | 657 | 686 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SMART | ANK_2a | 527 | 556 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | SMART | ANK_2a | 560 | 589 | IPR002110 | GO:0005515(InterPro) | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 657 | 688 | - | - | |
| Clacu06g1155 | 875 | SUPERFAMILY | Ankyrin repeat | 531 | 709 | IPR036770 | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 593 | 624 | - | - | |
| Clacu06g1155 | 875 | Gene3D | Jelly Rolls | 344 | 506 | IPR014710 | - | |
| Clacu06g1155 | 875 | Pfam | Cyclic nucleotide-binding domain | 399 | 485 | IPR000595 | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 560 | 591 | - | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | KHA domain profile. | 806 | 875 | IPR021789 | - | |
| Clacu06g1155 | 875 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 482 | IPR000595 | - | |
| Clacu06g1155 | 875 | Pfam | Ion transport protein | 62 | 307 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g0708 | Clacu-Chr3:7857543 | Clacu06g1155 | Clacu-Chr6:21956845 | 5.00E-07 | dispersed | |
| Clacu03g0881 | Clacu-Chr3:10927334 | Clacu06g1155 | Clacu-Chr6:21956845 | 1.10E-88 | dispersed | |
| Clacu05g1860 | Clacu-Chr5:27823220 | Clacu06g1155 | Clacu-Chr6:21956845 | 1.50E-306 | dispersed | |
| Clacu05g1886 | Clacu-Chr5:28045203 | Clacu06g1155 | Clacu-Chr6:21956845 | 4.90E-09 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g1155 | K21867 | - | csv:101220784 | 1672.91 |