Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1155 ATGGAGACCATTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAACAACTCTCCAGAGATGGCAGTCAGTACAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTTAAGCTCCGGCGCTTTATCATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCACCACTCTCTGTTACAGACAACGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCCTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAGGATTGCTCTGAAGTACTCAAGGACATGGCTAATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTTCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCCGAAGAGTCAGTGCTCTGTTTTCCAGACTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCCAAACTCGTTTGTGTTACTCTCTTTGCAGTTCACTGTGCTGCATGCTTCTATTATCTTCTTGCTGCTCGTTATCGTGACCCGAAAAATACGTGGATTGGAGCATCTATGGAGAACTTTCTGGAACAAAGTTTGTGGATCAGATATGTCACTTCCGTTTACTGGTCTATCACTACCCTAACCACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACGGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACCAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCAATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATTCTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTTCTCAAGAATGGAGTTGAACAGCCTGTTGGAGAGGCTAAAACTGGCGATCTTTGTGGAGAGATTGGGGTGTTATGTTATAGACCACAACTGTTTACTGTTCGTACAAAGCGTTTGAGTCAGCTGCTGCGTCTGAATCGGACGGCTTTTCTAAATATTGTTCAATCTAATGTCGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTGGCTAGAGGCAGAATGGACCTACCACTAAGTCTTTGCTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAACGAATCAGACAATACCGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCTGATCCCAATAGTAGAGATTCAGATGGGAGTGTGCCATTATGGGAGGCAATACTAGGTGGCCATGAGGCGGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATTGGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGATGTTACGAGTGCCAGGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAGGACAACATTGAGATTGTCAAGTTTCTTCTCAAACAAGGTGCTGATATTGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCTGACCAACAGGGACATGAAGAAATTAAAATCCTCTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCAATTCCTGTACCGGAGAAGCAGACAGGGATTCGCTTCCTTGGAAGATTTACAAGTGAGCCTATGATTCGTCCTCAACCTCAGGAAGCAAATGACGGTTCATGGCCGGGTCAATCACGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCTGTGGACAGAACTCTCGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTAGCGGGAAGTTGGTGCTGCTTCCAGAAAGCTACAACAAGCTGCTCGAGATTGGTGTCAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGATGGTGATCATCTTATTTTTGTCAGTGATGGAAGGACCTCATAA 2628 43.57 METIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKRIALKYSRTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEQSLWIRYVTSVYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEAVVQLLIDNGANLRLGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKILFQTTKESKTQSVLAIPVPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTCGQNSRTNPARVIISCPEIGEVSGKLVLLPESYNKLLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTS 875
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 21956845 21961914 - ClG42_06g0115500.10 Clacu06g1155 251803
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1155 875 FunFam Potassium channel SKOR 63 301 - -
Clacu06g1155 875 MobiDBLite consensus disorder prediction 745 765 - -
Clacu06g1155 875 Gene3D - 63 301 - -
Clacu06g1155 875 FunFam Potassium channel KAT2 368 504 - -
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 Pfam Ankyrin repeats (3 copies) 532 621 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 Pfam Ankyrin repeats (3 copies) 631 710 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu06g1155 875 PANTHER POTASSIUM CHANNEL AKT1 22 867 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Clacu06g1155 875 CDD CAP_ED 380 485 IPR000595 -
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Clacu06g1155 875 Gene3D - 528 712 IPR036770 -
Clacu06g1155 875 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Clacu06g1155 875 SMART cnmp_10 380 497 IPR000595 -
Clacu06g1155 875 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SMART ANK_2a 593 622 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SMART ANK_2a 657 686 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SMART ANK_2a 527 556 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 SMART ANK_2a 560 589 IPR002110 GO:0005515(InterPro)
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Clacu06g1155 875 SUPERFAMILY Ankyrin repeat 531 709 IPR036770 -
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Clacu06g1155 875 Gene3D Jelly Rolls 344 506 IPR014710 -
Clacu06g1155 875 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
Clacu06g1155 875 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Clacu06g1155 875 ProSiteProfiles KHA domain profile. 806 875 IPR021789 -
Clacu06g1155 875 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Clacu06g1155 875 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0708 Clacu-Chr3:7857543 Clacu06g1155 Clacu-Chr6:21956845 5.00E-07 dispersed
Clacu03g0881 Clacu-Chr3:10927334 Clacu06g1155 Clacu-Chr6:21956845 1.10E-88 dispersed
Clacu05g1860 Clacu-Chr5:27823220 Clacu06g1155 Clacu-Chr6:21956845 1.50E-306 dispersed
Clacu05g1886 Clacu-Chr5:28045203 Clacu06g1155 Clacu-Chr6:21956845 4.90E-09 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1155 K21867 - csv:101220784 1672.91