Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1200 ATGCGGAGCTTTGTGTGCCACTGGCGGTGTCAGTGTGGGAATGTCAACATTGCAGTGTTGCGAGCGATCAAGACTAGTTTGCTGGTGAAACAACGGGGATCGACTCTGCTATCCCGACGATCGCGGCATCACTCTCCGTCAAGTGAAAGTGTGGACCCCACGGTTCAAACAGTACAACCTGAAAAGATCTATCTGAGTTTTGGGTTTTACTCAAAGTCTTGTCCTAAAGTTGAGTCCATTGTTAGGTCTACCGTTGAGTCTTATTACAAGGCTGATCCCACCATTGCTGCTGGCTTGCTTAGGCTTCATTTTCATGATTGTTTTGTTCAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGGTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCCCAACTCGAAAGTTTGTGTCCTGGGGTTGTTTCTTGTGCAGATATTCTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCACGGGCAGAAGGGACGGGACGATTTCTATGCGTTTCCAGGCGGAAGATCTTCCTTCTCCATTTGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATTGGGCAAACGGATTGCCAGCTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCGTTCTTGACTGAACTGAGAAGCCTGTGCCCTTTGGATGGGGATCCATTCAGAGGAGTGGCCATGGACAAGGGCAGCCAGTTGAAATTTGACAACAGTTTTTACAAGAACTTGATAGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACCAGAGACATTGTGAAGAGATATGCTGGGAATTTAAGGGGATTGTTGGGCCTTAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACGCAAGGGGAGATTAGAAAAGTGTGTTACCAGTTCAATAAGCAGTGA 1101 45.78 MRSFVCHWRCQCGNVNIAVLRAIKTSLLVKQRGSTLLSRRSRHHSPSSESVDPTVQTVQPEKIYLSFGFYSKSCPKVESIVRSTVESYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVVSCADILALATRDAVDLSDGPSWSVPTGRRDGTISMRFQAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGQTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVAMDKGSQLKFDNSFYKNLIDGNGVLESDQRLWSHPSTRDIVKRYAGNLRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRKVCYQFNKQ 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22572875 22575779 - ClG42_06g0120000.10 Clacu06g1200 251848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1200 366 CDD secretory_peroxidase 65 360 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu06g1200 366 Gene3D Peroxidase, domain 2 197 343 - -
Clacu06g1200 366 ProSiteProfiles Plant heme peroxidase family profile. 64 364 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 FunFam Peroxidase 197 343 - -
Clacu06g1200 366 FunFam Peroxidase 68 202 - -
Clacu06g1200 366 ProSitePatterns Peroxidases active site signature. 96 107 IPR019794 GO:0004601(InterPro)
Clacu06g1200 366 Gene3D - 68 364 - -
Clacu06g1200 366 PANTHER PEROXIDASE 25-RELATED 66 360 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 338 351 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 218 230 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 74 93 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 293 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 98 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 134 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 153 163 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 277 292 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Plant peroxidase signature 172 187 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 SUPERFAMILY Heme-dependent peroxidases 65 364 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 ProSitePatterns Peroxidases proximal heme-ligand signature. 219 229 IPR019793 -
Clacu06g1200 366 Pfam Peroxidase 81 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Haem peroxidase superfamily signature 172 184 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Haem peroxidase superfamily signature 96 110 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Haem peroxidase superfamily signature 279 294 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu06g1200 366 PRINTS Haem peroxidase superfamily signature 154 171 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1200 Clacu-Chr6:22572875 Clacu09g1599 Clacu-Chr9:27754653 4.30E-106 dispersed
Clacu06g1198 Clacu-Chr6:22553553 Clacu06g1200 Clacu-Chr6:22572875 9.60E-126 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1200 K00430 - csv:101214998 568.155