Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1202 ATGCCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTCGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAACGTTATTACGACGAACAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCATAATAACGACAACGACAATGCAGATTCTCCTATGACGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTAATGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 46.39 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTNKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNDNDNADSPMTMAVVASDHQSPMAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPNEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22624641 22625421 - ClG42_06g0120200.10 Clacu06g1202 251850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1202 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Clacu06g1202 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Clacu06g1202 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Clacu06g1202 216 PIRSF PTI6 111 206 IPR017392 GO:0003700(InterPro)
Clacu06g1202 216 PIRSF PTI6 2 123 IPR017392 GO:0003700(InterPro)
Clacu06g1202 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1202 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1202 Clacu-Chr6:22624641 Clacu08g1518 Clacu-Chr8:25064303 7.50E-26 dispersed
Clacu11g0441 Clacu-Chr11:4146823 Clacu06g1202 Clacu-Chr6:22624641 6.20E-61 wgd
Clacu05g1844 Clacu-Chr5:27697131 Clacu06g1202 Clacu-Chr6:22624641 1.50E-54 wgd
Clacu06g1202 Clacu-Chr6:22624641 Clacu07g1270 Clacu-Chr7:27540030 1.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47902 PF00847 AP2 7.20E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1202 - - - 0.0