Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1207 ATGCTTCGGTTCGTTGCTTGTCTTGTCATTTCTTTGCCGGACTTCGTCGCCACATTTTTCCGATTCCATATTAACCGCTCTGCTCCTTCTCCGCTTTTCTTTTTCTTAGTTGACAATTATCGCGGAGTTTGTTTTCTTCTGGGAAATGCGATCATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAGCTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTACTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGATTTATGAGGTGGCACCGTCGCTTTTTATGGTGGACGTTCGCAAAGCTGCCGGTGACACACTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1467 43.01 MLRFVACLVISLPDFVATFFRFHINRSAPSPLFFFLVDNYRGVCFLLGNAIMRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEAESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKTRLERRTGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22734961 22739711 - ClG42_06g0120700.10 Clacu06g1207 251855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1207 488 FunFam Non-specific serine/threonine protein kinase 355 481 - -
Clacu06g1207 488 Gene3D Transferase(Phosphotransferase) domain 1 142 323 - -
Clacu06g1207 488 Gene3D Phosphorylase Kinase; domain 1 52 141 - -
Clacu06g1207 488 CDD CIPK_C 362 477 - -
Clacu06g1207 488 Gene3D Kinase associated domain 1, KA1 355 481 - -
Clacu06g1207 488 SUPERFAMILY Protein kinase-like (PK-like) 59 355 IPR011009 -
Clacu06g1207 488 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 56 466 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu06g1207 488 FunFam Non-specific serine/threonine protein kinase 55 357 - -
Clacu06g1207 488 Pfam Protein kinase domain 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1207 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1207 488 ProSiteProfiles Protein kinase domain profile. 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1207 488 ProSitePatterns Protein kinases ATP-binding region signature. 68 100 IPR017441 GO:0005524(InterPro)
Clacu06g1207 488 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165(InterPro)
Clacu06g1207 488 FunFam Non-specific serine/threonine protein kinase 53 141 - -
Clacu06g1207 488 Pfam NAF domain 358 416 IPR004041 GO:0007165(InterPro)
Clacu06g1207 488 SMART serkin_6 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0050 Clacu-Chr5:755297 Clacu06g1207 Clacu-Chr6:22734961 5.10E-135 dispersed
Clacu05g0800 Clacu-Chr5:6855902 Clacu06g1207 Clacu-Chr6:22734961 5.50E-108 dispersed
Clacu06g1207 Clacu-Chr6:22734961 Clacu06g1315 Clacu-Chr6:24121893 5.90E-111 dispersed
Clacu06g1207 Clacu-Chr6:22734961 Clacu08g1342 Clacu-Chr8:23428592 6.60E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73646 PF00069 Pkinase 1.30E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1207 - - - 0.0