Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu06g1211 | ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA | 579 | 43.18 | MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22794077 | 22797260 | - | ClG42_06g0121100.10 | Clacu06g1211 | 251859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu06g1211 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
Clacu06g1211 | 192 | Pfam | YABBY protein | 9 | 166 | IPR006780 | GO:0007275(InterPro) | |
Clacu06g1211 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
Clacu06g1211 | 192 | Gene3D | High mobility group box domain | 105 | 161 | IPR036910 | - | |
Clacu06g1211 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 10 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Clacu06g1211 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2303 | Clacu-Chr2:36101771 | Clacu06g1211 | Clacu-Chr6:22794077 | 5.30E-46 | dispersed | |
Clacu05g2577 | Clacu-Chr5:33676055 | Clacu06g1211 | Clacu-Chr6:22794077 | 2.20E-22 | dispersed | |
Clacu05g2742 | Clacu-Chr5:34895246 | Clacu06g1211 | Clacu-Chr6:22794077 | 1.60E-31 | dispersed | |
Clacu06g1211 | Clacu-Chr6:22794077 | Clacu10g0295 | Clacu-Chr10:3849611 | 2.40E-39 | dispersed | |
Clacu11g0446 | Clacu-Chr11:4204253 | Clacu06g1211 | Clacu-Chr6:22794077 | 6.20E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47903 | PF04690 | YABBY | 9.80E-70 | CL0114 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu06g1211 | K25796 | - | csv:101215951 | 364.77 |