Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1211 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 579 43.18 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 22794077 22797260 - ClG42_06g0121100.10 Clacu06g1211 251859
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1211 192 CDD HMG-box_SF 120 156 - -
Clacu06g1211 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Clacu06g1211 192 FunFam axial regulator YABBY 5-like 104 162 - -
Clacu06g1211 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Clacu06g1211 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Clacu06g1211 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2303 Clacu-Chr2:36101771 Clacu06g1211 Clacu-Chr6:22794077 5.30E-46 dispersed
Clacu05g2577 Clacu-Chr5:33676055 Clacu06g1211 Clacu-Chr6:22794077 2.20E-22 dispersed
Clacu05g2742 Clacu-Chr5:34895246 Clacu06g1211 Clacu-Chr6:22794077 1.60E-31 dispersed
Clacu06g1211 Clacu-Chr6:22794077 Clacu10g0295 Clacu-Chr10:3849611 2.40E-39 dispersed
Clacu11g0446 Clacu-Chr11:4204253 Clacu06g1211 Clacu-Chr6:22794077 6.20E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47903 PF04690 YABBY 9.80E-70 CL0114 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1211 K25796 - csv:101215951 364.77