Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1227 TGGAGAGGAAAGGAAAAGAGAAAGAAGGGGAAAGAAGTAAAGCAAAGGGTTAGCAGCATAAACCCTGGCGCCGCATCACAGCCGAAGGATTTGTACGGCGGAAAATTTGGCTTCTCTGCCCGAAACAGCTTGAAGGGTATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGGTTCTGCTACTGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGCTGAGCTGGCCTCTGGTAATGCCAATCCATCAGAATCAGATAACAAAACAGCATGCAAACTGCTTCAGTTCTCTTATCATGAGCTCAAGGCAGCAACAGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGAATTACGGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCTACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATCAAGATTGCCCTTGGAGCGGCGAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCTGTAATCTATAGAGATTTTAAGACATCCAATATCTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGGCATCTGACATCGAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTGGATCCCCGCTTGGAATTCAACTATTCCATAAAAGGGGTGCAAAAGGTCTCGCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAACGTGA 1413 45.01 WRGKEKRKKGKEVKQRVSSINPGAASQPKDLYGGKFGFSARNSLKGMEKRCGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYGSATETRYLNASNRDLCTLNEAELASGNANPSESDNKTACKLLQFSYHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDLRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVT 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23009561 23013691 - ClG42_06g0122700.10 Clacu06g1227 251875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1227 470 PANTHER OS01G0588500 PROTEIN-RELATED 116 424 IPR050823 -
Clacu06g1227 470 FunFam Probable serine/threonine-protein kinase PBL8 227 440 - -
Clacu06g1227 470 ProSitePatterns Protein kinases ATP-binding region signature. 147 179 IPR017441 GO:0005524(InterPro)
Clacu06g1227 470 MobiDBLite consensus disorder prediction 437 470 - -
Clacu06g1227 470 Gene3D Phosphorylase Kinase; domain 1 115 226 - -
Clacu06g1227 470 MobiDBLite consensus disorder prediction 1 26 - -
Clacu06g1227 470 FunFam Serine/threonine-protein kinase BIK1 109 226 - -
Clacu06g1227 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1227 470 Gene3D Transferase(Phosphotransferase) domain 1 227 437 - -
Clacu06g1227 470 Pfam Protein tyrosine and serine/threonine kinase 145 420 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1227 470 ProSiteProfiles Protein kinase domain profile. 141 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1227 470 CDD STKc_IRAK 147 423 - -
Clacu06g1227 470 MobiDBLite consensus disorder prediction 453 470 - -
Clacu06g1227 470 SUPERFAMILY Protein kinase-like (PK-like) 124 431 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2659 Clacu-Chr5:34229052 Clacu06g1227 Clacu-Chr6:23009561 3.70E-137 dispersed
Clacu06g1227 Clacu-Chr6:23009561 Clacu09g1881 Clacu-Chr9:33654410 1.70E-139 dispersed
Clacu11g0461 Clacu-Chr11:4379198 Clacu06g1227 Clacu-Chr6:23009561 1.10E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73648 PF00069 Pkinase 6.50E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1227 - - - 0.0