Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1288 ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACCCCGGTCGCTTCTACTGGTCGAAACCCGCAAAGGTTTACCCCCCAGCATCCCTGCGACGTTGCCAGTGCAGACACTGTGCCCGTTCCTGGTAAGGGGAACGTCTCTGATATAGGATTTGTTGAGCTAGGATATCGAAATGTGGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCTTTACACATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTGATCTGAATGTCATGGGCAATCGTGGTGGTGCCAATGCTGTTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTCGAGTCATCGATTTGGGGGAGGTGGCTTGGAATCTGTGAGCAATAATATCTCAATGGGGTCTGGAGATAGTGCCAATTTATGCAATAAGGTAACTGCCAATGGTGATCAGATTAATAGTGATAGTACTTCTGGTTTTAGCTCCCACTTGAGGAATTCGGTTGATGGGAGTGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGACCAAGTGATGGGATGTTGAGATACATTGGAGGGCAAACAAGGATTATAAGTGTTAGGAGAGACGTGACTTTCAATGAGCTTGTACGAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGACGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGATCTTCAGAAGGATCGGCTAAATTGAGGATGTTTCTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGGGATGTTTGATGGCGTTGGTGGCTGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAAAATTCTGACTTAAGTGGGATGGAGGCGATGGATATCGCAAATAATGATCTAGGGGGGGTTGTGAGTGGGCCTCCATCCTCAACACTGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTAGTGAAAGTAGATCCTGTCTCTGCAGTTTTTGTAGACGCCTCAGCTGTTCCATCAAGTATTCCTGTGCTTAACTCTGTTCCTCCTGAAGCTTCTTCGCAGCCTGAGGTGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTGTTGACTTTCCTCCACCTGTGTCTCAATTGCAGCCTACTGGTGATCCTCGGCAAGCAGCGTGTGTGGACTTTGTACAATTTCGTCCACAACTTGGCTTTTCAAACTCCCATCATTTAGGGGCATCTGGGTCTATGTTTATACAACAGCCAAATACTCTTGGAATTACCCCTAATCAGTTTGTCCCTGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCTCAGTACTATGCTAAATACCTATCAATCGTTGGTTCAATATCCACGATCCCAGATGGATTATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACGCCAGGTTCCAGCTCCTCCAGTATCAGTAGGGGTTGGGTTTGGTTTACATCAGGTACCACAGTCTGATCAGACAGTTACGTCTGATGAATTGGTATCCCATCATCGGGCAACTTTTTCTGAGAAGATCGAGAGGTTGGATGGCTGTTACTTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACCCTGTATCTGATTCAAAGTTTTCATATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCAATGAAAAATATTACAGAAACTGGAGCTTTGAGGCAACAAACTACTGAACATGGTGTTGGAATGCAAACCAGGATCTTTAATCCCATGGATCCAGAAGTTGAAAAACCTTCAGTGGAAGCTATTAGCTTCCCACATCGTATTGAGGGTCAACATGAGAATGACAACACTCTTAAAGATCAGCATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGCTCTTGGGAGGCAAGGTGATATTCAGTCACCCCATGTTGCTGTTGTAGAACAGATTTGTCAGTCTGGCGAAGTTGATACTCTCCAGCACCACTATGTAGCTGTAGAGAATCAGTTCCGTCCAAATTTAGTCCTGGATAAACACGATGTTTGCTTTGTAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATCCAAATGAGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCCACCCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTCAAGTATATGCCCAACTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAGAGAACTAGGAAGGAGGACAATTTTGGCAGCTGTTCACAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATGGTGGTTCTCGACCCAAATAACGTAAAGCCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAATGAACGACCTGTTGAGTCCAGTGAAGTGGCACAACCTCCTGTCAGGGGCTCTCCCGGAACATTACCACAAGCTGAAAATGGGATGCAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATGAAGACTGAACATATAAACAATGGAGTCCCTGATTCTTCTGAGTGGAAGGAGGACACTTCTCTATTGGAAACTAGGATGGTATCTGGTGATGTTGAATCTGTTTCTTTGCCTATCAGGACTGGAAATATGCAGGACACTGCAAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTGCAGCATGATACTCATTTTTTGCCGCCTAGACCAACTAAAATTCAACCGAGGAATGAAGCCCTTGCCTCCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACCAAATGTAGAAACAATTCTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAGCAAGGGTTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCGGCTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATCCAGTTTGTGAAACTATCACCGAAGGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGAAAAACCAAACTTTGGTTTTCCAATGTCAGAAGGATTTGGCCGCTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTAGGTTCTGGCACTTTTGGCACTGTTTATCATGGAAAATGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAACCATCTGAACAAGATCGCATGAGAGAGGACTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTATGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAACGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGACAAGCGTAAGCGTCTCTTGATTGCTATGGATGCAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGTGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTCTCCTTTGGTATTGTCTTGTGGGAGCTCCTCACTGGTGAAGAGCCCTACGCAAATTTGCATTATGGGATTATCATAGGTGGCATAGTAAGCAACACGTTGCGACCTGAAGTTCCAGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCTGAGCCGTCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGGTCCATGGCTACTAAGGTTCCTCCGAAAATACCCAACCATCCACAGTAG 4356 44.54 MAFDQNAIPTGLRPLNVARTLVEDPHLTPVASTGRNPQRFTPQHPCDVASADTVPVPGKGNVSDIGFVELGYRNVVAGVTAWCPRMPPPFTHTATIPAVGFGYCSDLNVMGNRGGANAVELASSCMTVGINHSTNSSHRFGGGGLESVSNNISMGSGDSANLCNKVTANGDQINSDSTSGFSSHLRNSVDGSAVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFNELVRKMVDTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSEGSAKLRMFLFSASELDSSGMVQFGDLHDSGQRYVETVNGMFDGVGGCITRKESFASATSTQNSDLSGMEAMDIANNDLGGVVSGPPSSTLSLPGGNLGTAVAIGPGLVKVDPVSAVFVDASAVPSSIPVLNSVPPEASSQPEVELGRSVPVTLMQQQPGVDFPPPVSQLQPTGDPRQAACVDFVQFRPQLGFSNSHHLGASGSMFIQQPNTLGITPNQFVPAVHMTMAPSSSHLSTMLNTYQSLVQYPRSQMDYFSNASTFGPRFVQLSAEQGYNSRQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHRATFSEKIERLDGCYFCQKAVPHAHSNSPLQDQRENLTNPVSDSKFSYYSHHPEDHLTAHPMKNITETGALRQQTTEHGVGMQTRIFNPMDPEVEKPSVEAISFPHRIEGQHENDNTLKDQHNLDHGRISALQGALGRQGDIQSPHVAVVEQICQSGEVDTLQHHYVAVENQFRPNLVLDKHDVCFVGAPILASEYNTHENPNEYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESSSICPTDICANLDHCKSPIERTRKEDNFGSCSQPVSEREVLLDNNFVKPMVVLDPNNVKPTTFACSSSEVPYLMNERPVESSEVAQPPVRGSPGTLPQAENGMQHLESNEVCHSRNPHLFDMKTEHINNGVPDSSEWKEDTSLLETRMVSGDVESVSLPIRTGNMQDTANSLFSNQDPWNLQHDTHFLPPRPTKIQPRNEALASREPLTESPFRNIGEPNVETILDDGVCHPLVNSSKGSSEEQIRKDLQAVAEGVAASVLQSAQSSSSELHERIDPVCETITEGDVQNNDDGRTRHSEKPNFGFPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMATKVPPKIPNHPQ 1451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23831199 23838498 + ClG42_06g0128800.10 Clacu06g1288 251936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1288 1451 CDD STKc_MAP3K-like 1178 1435 - -
Clacu06g1288 1451 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1260 1451 - -
Clacu06g1288 1451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1297 1309 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 Gene3D - 232 314 - -
Clacu06g1288 1451 CDD PB1_UP2 214 312 - -
Clacu06g1288 1451 SUPERFAMILY CAD & PB1 domains 226 318 - -
Clacu06g1288 1451 PANTHER SERINE-THREONINE PROTEIN KINASE 169 1438 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu06g1288 1451 ProSitePatterns Protein kinases ATP-binding region signature. 1178 1209 IPR017441 GO:0005524(InterPro)
Clacu06g1288 1451 SUPERFAMILY Protein kinase-like (PK-like) 1163 1433 IPR011009 -
Clacu06g1288 1451 PRINTS Tyrosine kinase catalytic domain signature 1254 1267 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 PRINTS Tyrosine kinase catalytic domain signature 1406 1428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 PRINTS Tyrosine kinase catalytic domain signature 1362 1384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 PRINTS Tyrosine kinase catalytic domain signature 1291 1309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 SMART PB1_new 225 314 IPR000270 GO:0005515(InterPro)
Clacu06g1288 1451 ProSiteProfiles Protein kinase domain profile. 1172 1436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 Pfam Protein tyrosine and serine/threonine kinase 1174 1435 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 MobiDBLite consensus disorder prediction 1134 1154 - -
Clacu06g1288 1451 SMART serkin_6 1172 1438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1288 1451 Gene3D Phosphorylase Kinase; domain 1 1165 1259 - -
Clacu06g1288 1451 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 230 314 - -
Clacu06g1288 1451 Gene3D Transferase(Phosphotransferase) domain 1 1260 1448 - -
Clacu06g1288 1451 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1165 1259 - -
Clacu06g1288 1451 Pfam PB1 domain 230 313 IPR000270 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1288 Clacu-Chr6:23831199 Clacu11g1440 Clacu-Chr11:25386702 5.80E-138 dispersed
Clacu08g1924 Clacu-Chr8:28342971 Clacu06g1288 Clacu-Chr6:23831199 3.90E-24 dispersed
Clacu06g1288 Clacu-Chr6:23831199 Clacu03g0420 Clacu-Chr3:4611594 1.10E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73650 PF07714 PK_Tyr_Ser-Thr 6.90E-60 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1288 - - - 0.0