Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1305 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGACGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCACTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACAAAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATAATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTGTTTGA 2097 43.73 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQQSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSIMKREQNEIPEMNGEFGFDHFSLGSCV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23960247 23963799 + ClG42_06g0130500.10 Clacu06g1305 251953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1305 698 CDD REC_typeB_ARR-like 26 140 - -
Clacu06g1305 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Clacu06g1305 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Clacu06g1305 698 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Clacu06g1305 698 SUPERFAMILY CheY-like 23 148 IPR011006 -
Clacu06g1305 698 Gene3D - 207 270 - -
Clacu06g1305 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Clacu06g1305 698 FunFam Two-component response regulator 207 270 - -
Clacu06g1305 698 MobiDBLite consensus disorder prediction 157 178 - -
Clacu06g1305 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Clacu06g1305 698 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Clacu06g1305 698 MobiDBLite consensus disorder prediction 147 208 - -
Clacu06g1305 698 Gene3D - 24 182 - -
Clacu06g1305 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Clacu06g1305 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 371 IPR045279 GO:0009736(InterPro)
Clacu06g1305 698 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0599 Clacu-Chr1:6193004 Clacu06g1305 Clacu-Chr6:23960247 1.50E-19 dispersed
Clacu06g0463 Clacu-Chr6:5422022 Clacu06g1305 Clacu-Chr6:23960247 1.60E-81 dispersed
Clacu06g1305 Clacu-Chr6:23960247 Clacu11g0484 Clacu-Chr11:4586300 5.00E-156 dispersed
Clacu04g0916 Clacu-Chr4:23456449 Clacu06g1305 Clacu-Chr6:23960247 9.40E-18 transposed
Clacu04g1268 Clacu-Chr4:26772822 Clacu06g1305 Clacu-Chr6:23960247 3.10E-16 transposed
Clacu05g1796 Clacu-Chr5:27168716 Clacu06g1305 Clacu-Chr6:23960247 8.00E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47905 PF00072 Response_reg 1.70E-25 CL0304 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1305 K14491 - csv:101213687 1254.97