Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1311 ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCTCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCATTTCGATCCCGCCTCCGCCGCTTCCCACGACGACTTTCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTGATTGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA 1269 55.63 MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPASAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVIGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24045031 24048034 + ClG42_06g0131100.10 Clacu06g1311 251959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1311 422 MobiDBLite consensus disorder prediction 295 330 - -
Clacu06g1311 422 SMART finulus 223 272 IPR011598 GO:0046983(InterPro)
Clacu06g1311 422 MobiDBLite consensus disorder prediction 28 55 - -
Clacu06g1311 422 MobiDBLite consensus disorder prediction 381 422 - -
Clacu06g1311 422 MobiDBLite consensus disorder prediction 173 212 - -
Clacu06g1311 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983(InterPro)
Clacu06g1311 422 MobiDBLite consensus disorder prediction 169 220 - -
Clacu06g1311 422 Gene3D - 211 274 IPR036638 GO:0046983(InterPro)
Clacu06g1311 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 364 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu06g1311 422 MobiDBLite consensus disorder prediction 304 330 - -
Clacu06g1311 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 277 IPR036638 GO:0046983(InterPro)
Clacu06g1311 422 FunFam Transcription factor bHLH66 214 279 - -
Clacu06g1311 422 Pfam Helix-loop-helix DNA-binding domain 222 267 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1677 Clacu-Chr3:30539993 Clacu06g1311 Clacu-Chr6:24045031 2.80E-34 dispersed
Clacu06g1311 Clacu-Chr6:24045031 Clacu09g0742 Clacu-Chr9:6559834 1.50E-46 dispersed
Clacu06g1311 Clacu-Chr6:24045031 Clacu02g1748 Clacu-Chr2:31013676 2.20E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47906 PF00010 HLH 1.60E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1311 - - - 0.0