Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1314 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGATACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTACAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCACCTACGCACGTAGACGATGAATTAAAAGATGATCACGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.57 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSTTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPTHVDDELKDDHEVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24113675 24114694 + ClG42_06g0131400.10 Clacu06g1314 251962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1314 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Clacu06g1314 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 Gene3D - 162 288 IPR015300 -
Clacu06g1314 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Clacu06g1314 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Clacu06g1314 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1314 K09287 - - csv:101212246 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0980 Clacu-Chr3:15079741 Clacu06g1314 Clacu-Chr6:24113675 1.80E-44 dispersed
Clacu03g1420 Clacu-Chr3:27387931 Clacu06g1314 Clacu-Chr6:24113675 1.90E-82 dispersed
Clacu06g1314 Clacu-Chr6:24113675 Clacu10g1846 Clacu-Chr10:32150667 3.40E-25 dispersed
Clacu06g1314 Clacu-Chr6:24113675 Clacu05g2496 Clacu-Chr5:33046443 1.80E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1846 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.4e-48 187.2
Clacu06g0233 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Clacu07g0810 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.4e-40 160.6
Clacu01g0123 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Clacu05g2496 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Clacu01g0123 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Clacu06g0233 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 4.7e-53 205.3
Clacu07g0810 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.5e-51 198.0
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Clacu10g1846 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Clacu10g1846 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Clacu06g0233 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Clacu01g0123 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Clacu07g0810 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Clacu01g0123 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Clacu07g0810 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.8e-49 191.0
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Clacu06g0233 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.3e-42 169.9
Clacu01g0123 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Clacu07g0810 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Clacu10g1846 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Clacu06g0233 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Clacu01g0123 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Clacu06g1314 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Clacu03g1420 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Clacu06g1314 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Clacu03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Clacu05g2496 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Clacu03g0980 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Clacu01g0123 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Clacu06g0233 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Clacu10g1846 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Clacu05g2496 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.3e-100 360.5
Clacu03g0980 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.7e-89 323.9
Clacu10g1846 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Clacu05g2496 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Clacu03g0980 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Clacu10g1846 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.7e-39 157.9
Clacu01g0123 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Clacu06g0233 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Clacu05g2496 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.3e-100 360.5
Clacu03g0980 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.7e-89 323.9
Clacu10g1846 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Clacu06g1314 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Clacu03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Clacu10g1846 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.0e-44 174.9
Clacu06g0233 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.5e-40 161.0
Clacu01g0123 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Clacu07g0810 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Clacu06g0233 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.3e-42 169.9
Clacu01g0123 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.8e-42 168.3
Clacu07g0810 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Clacu10g1846 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.4e-48 187.2
Clacu06g0233 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Clacu07g0810 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.4e-40 160.6
Clacu01g0123 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Clacu05g2496 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Clacu10g1846 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Clacu06g0233 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Clacu01g0123 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Clacu01g0123 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Clacu06g0233 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 4.7e-53 205.3
Clacu07g0810 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.5e-51 198.0
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Clacu10g1846 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Clacu06g1314 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Clacu03g1420 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Clacu01g0123 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Clacu07g0810 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.8e-49 191.0
Clacu05g2496 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Clacu05g2496 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Clacu03g0980 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Clacu01g0123 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.0e-38 154.8
Clacu06g0233 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Clacu10g1846 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Clacu05g2496 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Clacu03g0980 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Clacu10g1846 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.7e-39 157.9
Clacu01g0123 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Clacu06g0233 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47907 PF02362 B3 8.50E-24 CL0405 Clacu TF