Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1314 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGATACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTACAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCACCTACGCACGTAGACGATGAATTAAAAGATGATCACGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.57 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSTTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPTHVDDELKDDHEVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24113675 24114694 + ClG42_06g0131400.10 Clacu06g1314 251962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1314 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Clacu06g1314 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 Gene3D - 162 288 IPR015300 -
Clacu06g1314 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Clacu06g1314 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Clacu06g1314 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1314 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Clacu06g1314 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0980 Clacu-Chr3:15079741 Clacu06g1314 Clacu-Chr6:24113675 1.80E-44 dispersed
Clacu03g1420 Clacu-Chr3:27387931 Clacu06g1314 Clacu-Chr6:24113675 1.90E-82 dispersed
Clacu06g1314 Clacu-Chr6:24113675 Clacu10g1846 Clacu-Chr10:32150667 3.40E-25 dispersed
Clacu06g1314 Clacu-Chr6:24113675 Clacu05g2496 Clacu-Chr5:33046443 1.80E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47907 PF02362 B3 8.50E-24 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1314 K09287 - csv:101212246 625.935