Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1315 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCAGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCAAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAATGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTCTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAATGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTACGGCCGGCGCTGAAAGACATCGTCTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 48.8 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24121893 24123185 - ClG42_06g0131500.10 Clacu06g1315 251963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1315 430 CDD CIPK_C 301 416 - -
Clacu06g1315 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Clacu06g1315 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Clacu06g1315 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1315 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Clacu06g1315 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1315 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1315 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Clacu06g1315 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Clacu06g1315 430 CDD STKc_SnRK3 16 270 - -
Clacu06g1315 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu06g1315 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Clacu06g1315 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Clacu06g1315 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Clacu06g1315 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Clacu06g1315 430 Coils Coil 280 300 - -
Clacu06g1315 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Clacu06g1315 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1747 Clacu-Chr2:30983019 Clacu06g1315 Clacu-Chr6:24121893 6.20E-213 dispersed
Clacu04g0699 Clacu-Chr4:21034220 Clacu06g1315 Clacu-Chr6:24121893 9.80E-118 dispersed
Clacu04g0701 Clacu-Chr4:21130902 Clacu06g1315 Clacu-Chr6:24121893 1.30E-147 dispersed
Clacu05g0539 Clacu-Chr5:4478495 Clacu06g1315 Clacu-Chr6:24121893 4.60E-92 dispersed
Clacu06g0401 Clacu-Chr6:4781208 Clacu06g1315 Clacu-Chr6:24121893 3.20E-105 dispersed
Clacu06g0648 Clacu-Chr6:7457518 Clacu06g1315 Clacu-Chr6:24121893 2.40E-100 dispersed
Clacu06g1207 Clacu-Chr6:22734961 Clacu06g1315 Clacu-Chr6:24121893 5.90E-111 dispersed
Clacu06g1315 Clacu-Chr6:24121893 Clacu10g1289 Clacu-Chr10:25826814 3.70E-133 dispersed
Clacu05g1787 Clacu-Chr5:27004319 Clacu06g1315 Clacu-Chr6:24121893 9.40E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73651 PF00069 Pkinase 1.50E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1315 - - - 0.0