Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1324 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCGAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCACCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAAGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTAAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACCATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGTGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCGCCAAATTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGCTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCACGTACTCCAACTGCATCGCCACTTTCGTCTAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCATTGACCCTCTCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACAATACCATAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCTCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCTCCTCCTCCTCCTCCAATGGCCCTTGTTGATCCTAAGATTTCCTCTCCAGTCCCTCCACCACCACCACCTCTTCCTATGATGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATCTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGCTATAAAGGGACGGAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCACCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACACTGGCAGGTCGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA 3903 42.94 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELRSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDHNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNAAMASSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPRTPTASPLSSSNFSTLRPDRSSLTEEIEIYSKDQNQLSTIDPLLSVTSAVSSSTQPPPPPPPPPPSTPPLNNTIAVRVKASPPTPPPFPSTFASHPTIASLVPQPPPPPPPPLTSTVNRKISSPIPSPPPPPPPPPMALVDPKISSPVPPPPPPLPMMSKQVESTSTSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFTSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNTGRSRFILLLNVLNRLLVSKLN 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24173019 24183687 - ClG42_06g0132400.10 Clacu06g1324 251972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1324 1300 SMART PTEN_C2_2 197 337 IPR014020 -
Clacu06g1324 1300 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Clacu06g1324 1300 Coils Coil 1229 1249 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 478 499 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 692 727 - -
Clacu06g1324 1300 Pfam Formin Homology 2 Domain 862 1229 IPR015425 -
Clacu06g1324 1300 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Clacu06g1324 1300 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 541 588 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 443 464 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 555 588 - -
Clacu06g1324 1300 Gene3D - 200 340 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 432 464 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 760 808 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 622 639 - -
Clacu06g1324 1300 Gene3D Formin, FH2 domain 854 1239 IPR042201 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 669 684 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 645 661 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 691 716 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 621 642 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 541 553 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 664 681 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 1247 1266 - -
Clacu06g1324 1300 SUPERFAMILY Formin homology 2 domain (FH2 domain) 785 1245 - -
Clacu06g1324 1300 PANTHER FORMIN-J 1 1253 IPR051144 -
Clacu06g1324 1300 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 617 858 - -
Clacu06g1324 1300 SMART it6_source 855 1299 IPR015425 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 826 858 - -
Clacu06g1324 1300 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Clacu06g1324 1300 ProSiteProfiles Formin homology-2 (FH2) domain profile. 855 1254 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1265 Clacu-Chr4:26752246 Clacu06g1324 Clacu-Chr6:24173019 6.10E-248 dispersed
Clacu06g1324 Clacu-Chr6:24173019 Clacu06g1702 Clacu-Chr6:27698462 5.10E-226 dispersed
Clacu07g0225 Clacu-Chr7:2651977 Clacu06g1324 Clacu-Chr6:24173019 7.50E-249 transposed
Clacu05g1785 Clacu-Chr5:26968209 Clacu06g1324 Clacu-Chr6:24173019 2.10E-297 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1324 K28090 - csv:101221713 1988.0