Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1324 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCGAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCACCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAAGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTAAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACCATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGTGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCGCCAAATTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGCTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCACGTACTCCAACTGCATCGCCACTTTCGTCTAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCATTGACCCTCTCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACAATACCATAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCTCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCTCCTCCTCCTCCTCCAATGGCCCTTGTTGATCCTAAGATTTCCTCTCCAGTCCCTCCACCACCACCACCTCTTCCTATGATGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATCTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGCTATAAAGGGACGGAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCACCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACACTGGCAGGTCGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA 3903 42.94 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELRSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDHNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNAAMASSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPRTPTASPLSSSNFSTLRPDRSSLTEEIEIYSKDQNQLSTIDPLLSVTSAVSSSTQPPPPPPPPPPSTPPLNNTIAVRVKASPPTPPPFPSTFASHPTIASLVPQPPPPPPPPLTSTVNRKISSPIPSPPPPPPPPPMALVDPKISSPVPPPPPPLPMMSKQVESTSTSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFTSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNTGRSRFILLLNVLNRLLVSKLN 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24173019 24183687 - ClG42_06g0132400.10 Clacu06g1324 251972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1324 1300 SMART PTEN_C2_2 197 337 IPR014020 -
Clacu06g1324 1300 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Clacu06g1324 1300 Coils Coil 1229 1249 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 478 499 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 692 727 - -
Clacu06g1324 1300 Pfam Formin Homology 2 Domain 862 1229 IPR015425 -
Clacu06g1324 1300 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Clacu06g1324 1300 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 541 588 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 443 464 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 555 588 - -
Clacu06g1324 1300 Gene3D - 200 340 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 432 464 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 760 808 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 622 639 - -
Clacu06g1324 1300 Gene3D Formin, FH2 domain 854 1239 IPR042201 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 669 684 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 645 661 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 691 716 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 621 642 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 541 553 - -
Clacu06g1324 1300 PRINTS Proline rich extensin signature 664 681 - -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 1247 1266 - -
Clacu06g1324 1300 SUPERFAMILY Formin homology 2 domain (FH2 domain) 785 1245 - -
Clacu06g1324 1300 PANTHER FORMIN-J 1 1253 IPR051144 -
Clacu06g1324 1300 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 617 858 - -
Clacu06g1324 1300 SMART it6_source 855 1299 IPR015425 -
Clacu06g1324 1300 MobiDBLite consensus disorder prediction 826 858 - -
Clacu06g1324 1300 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Clacu06g1324 1300 ProSiteProfiles Formin homology-2 (FH2) domain profile. 855 1254 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1324 K28090 - - csv:101221713 1988.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1265 Clacu-Chr4:26752246 Clacu06g1324 Clacu-Chr6:24173019 6.10E-248 dispersed
Clacu06g1324 Clacu-Chr6:24173019 Clacu06g1702 Clacu-Chr6:27698462 5.10E-226 dispersed
Clacu07g0225 Clacu-Chr7:2651977 Clacu06g1324 Clacu-Chr6:24173019 7.50E-249 transposed
Clacu05g1785 Clacu-Chr5:26968209 Clacu06g1324 Clacu-Chr6:24173019 2.10E-297 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu09g1033 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.4e-122 436.4
Clacu06g1933 . 252 1147 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Clacu06g0577 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Clacu09g2109 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Clacu05g2338 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.1e-116 414.1
Clacu07g0502 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.4e-98 354.0
Clacu10g1408 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Clacu02g1854 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Clacu09g1115 . 25 231 Protein tyrosine phosphatase (PTP) family AT2G32960 64.0 9.8e-73 270.4
Clacu03g1046 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Clacu10g0242 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.9e-101 365.5
Clacu11g0342 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Clacu11g0342 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Clacu10g0242 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Clacu02g1854 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Clacu09g1115 . 34 232 Protein tyrosine phosphatase (PTP) family AT4G03960 63.8 2.3e-69 258.8
Clacu03g1046 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Clacu03g1046 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Clacu02g1854 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Clacu07g0292 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu02g0667 . 82 685 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Clacu01g1774 . 115 671 Protein tyrosine phosphatase (PTP) family AT3G19420 58.2 4.8e-187 651.4
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu02g2250 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 7.9e-70 260.8
Clacu10g0180 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Clacu04g0781 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Clacu04g0781 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.9e-258 888.6
Clacu04g0781 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 3.9e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33