Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1345 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCAGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATATGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAGTCGCGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTAGGACTACGTCCTGGTGCTACTATTAATATCAGAAATAGTCGCGTTGTGTCCGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGCGCAGACGTATCTGGTATCCAGCCTGTTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAAGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTCCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGTGTGGAAGAACTCATATCACCAGCTTACCACCCCGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGAAACTGGATGTTTGCTATATGCTTCAGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTCAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA 2439 46.37 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATINIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPVGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGAGAGASASAGGSTTRPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELISPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVFKTISSNVSGQGLLDSLASDIEDCRSLAY 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24313698 24320630 - ClG42_06g0134500.10 Clacu06g1345 251993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1345 812 MobiDBLite consensus disorder prediction 174 194 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 113 130 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 1 43 - -
Clacu06g1345 812 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 57 810 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Clacu06g1345 812 MobiDBLite consensus disorder prediction 584 618 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 25 43 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 112 204 - -
Clacu06g1345 812 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Clacu06g1345 812 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu06g1345 812 ProSiteProfiles MI domain profile. 646 768 IPR003891 -
Clacu06g1345 812 SMART ma3_7 647 759 IPR003891 -
Clacu06g1345 812 SUPERFAMILY ARM repeat 642 801 IPR016024 -
Clacu06g1345 812 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Clacu06g1345 812 Pfam MA3 domain 647 759 IPR003891 -
Clacu06g1345 812 Gene3D - 210 445 - -
Clacu06g1345 812 Gene3D - 640 806 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 481 502 - -
Clacu06g1345 812 MobiDBLite consensus disorder prediction 150 173 - -
Clacu06g1345 812 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0335 Clacu-Chr5:2891927 Clacu06g1345 Clacu-Chr6:24313698 3.90E-54 dispersed
Clacu06g0861 Clacu-Chr6:10795839 Clacu06g1345 Clacu-Chr6:24313698 2.70E-55 dispersed
Clacu03g0336 Clacu-Chr3:3866465 Clacu06g1345 Clacu-Chr6:24313698 5.50E-09 transposed
Clacu05g1774 Clacu-Chr5:26878398 Clacu06g1345 Clacu-Chr6:24313698 2.30E-279 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1345 K03260 - csv:101207520 1387.86