Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1362 ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTAATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTTAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCAACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCTCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG 1062 48.59 MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELNLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24483120 24487441 + ClG42_06g0136200.10 Clacu06g1362 252010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1362 353 MobiDBLite consensus disorder prediction 1 21 - -
Clacu06g1362 353 FunFam AP2-like ethylene-responsive transcription factor 140 201 - -
Clacu06g1362 353 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 SMART rav1_2 42 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 SMART rav1_2 141 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 MobiDBLite consensus disorder prediction 1 41 - -
Clacu06g1362 353 SUPERFAMILY DNA-binding domain 41 106 IPR016177 GO:0003677(InterPro)
Clacu06g1362 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 253 - -
Clacu06g1362 353 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 CDD AP2 140 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 MobiDBLite consensus disorder prediction 240 265 - -
Clacu06g1362 353 Pfam AP2 domain 140 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 FunFam AP2-like ethylene-responsive transcription factor 41 107 - -
Clacu06g1362 353 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1362 353 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1362 Clacu-Chr6:24483120 Clacu09g0347 Clacu-Chr9:2992537 2.70E-105 dispersed
Clacu06g1362 Clacu-Chr6:24483120 Clacu05g2399 Clacu-Chr5:32311312 4.90E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47909 PF00847 AP2 3.40E-09 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1362 K09285 - csv:101219103 659.062