Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1366 ATGCTTCTTCCTAAACTCCTCTGTTTCATCATTCTCTCTTCTGCCTTCCTTTGCCTTTCTTATGAACCTCGAAACCCTGAAGTGGAAGCTTTGATTAATGTGAAGACAGCATTGAATGATCCGCACGGCGTTCTTAGCAATTGGGATGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCTGAGAATCTTGTTATAGGATTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAATAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCCGGCCCAATACCAGCATCTTTTTCTCAGCTAAACGGTCTACGCTACCTGAGGTTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCTATGATATGTGGAAGTGGTCCTAATGAAGGTTGCTCTGGCTCAGCCAATGCTGTTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGAAGACTTAGATCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTTGGAATTCTTTGGCGCAGAAGAAATCAGAAGACCAAAACCATCTTAGACATCAATGTACACAATCATGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGAAACTTTAGTTTCAAGGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAGAAATATACTCGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTTCGCACAGAATTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGATTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTACCTCCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTACTGCGAAGCCGTAGTCGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTAACCACTGCTGTTCGTGGCACCGTTGGGCACATCGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTAATAGAGCTAATTACTGGAATGAGAGCTCTTGAATTTGGGAAGACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGGATTGCTTGTGGACAGAGAACTAGGCAACAACTATGATCAGATCGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGGGATGGCCTTGTGGAGAAATGGGCTGCTACCCACACTCATAATGATTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCAACAAATGCATTGAAGAATAATGGTAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGACGACGACGATGACGAGCGATCGTTAGACTCCTATGCCATGGAACTTTCCGGTCCGAGATAG 1920 45.62 MLLPKLLCFIILSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFSQLNGLRYLRLNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSGPNEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLILLALGILWRRRNQKTKTILDINVHNHEVGLVRLGNLRNFSFKELQLATDHFSSRNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVGLLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAATHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24533775 24537746 + ClG42_06g0136600.10 Clacu06g1366 252014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1366 639 Pfam Protein tyrosine and serine/threonine kinase 298 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1366 639 CDD TM_EGFR-like 226 259 - -
Clacu06g1366 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Clacu06g1366 639 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Clacu06g1366 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524(InterPro)
Clacu06g1366 639 SUPERFAMILY L domain-like 25 189 - -
Clacu06g1366 639 SMART serkin_6 294 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1366 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu06g1366 639 MobiDBLite consensus disorder prediction 596 613 - -
Clacu06g1366 639 SUPERFAMILY Protein kinase-like (PK-like) 273 564 IPR011009 -
Clacu06g1366 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 639 - -
Clacu06g1366 639 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Clacu06g1366 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Clacu06g1366 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Clacu06g1366 639 ProSiteProfiles Protein kinase domain profile. 294 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu06g1366 639 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515(InterPro)
Clacu06g1366 639 FunFam Somatic embryogenesis receptor-like kinase 1 371 583 - -
Clacu06g1366 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Clacu06g1366 639 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Clacu06g1366 639 MobiDBLite consensus disorder prediction 596 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1366 Clacu-Chr6:24533775 Clacu08g1943 Clacu-Chr8:28435414 5.40E-165 dispersed
Clacu06g1366 Clacu-Chr6:24533775 Clacu11g0656 Clacu-Chr11:6304090 3.60E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73655 PF07714 PK_Tyr_Ser-Thr 9.20E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1366 - - - 0.0