Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1390 ATGGCAAGGTTGTCGGGTGGGCGGTGTGTTGCCGCGATGGCGAAGGTGGGAAGTGTTGGTGATTGGGTTAGTTGGGCCCAACCTCCAGAGCGGTGGTTGACGTTGCCCTTTGGCTCTGCTTGCAAAGAGGTACGTGCAATTGAGGTGGGCGTTAGGGCGGTTGTTGCTTTGAGTCAATTAGAAGCTGCTGCAGCTTCTTCTTCGCCCATTTCCTTCACCCTCTCCACTCAATCTCTTACCAATTCTAAGCGCTTCCTAAGACCTGGAATTTCACTCACCCGAGCTTCCTTCTCTGTTCCAGGCAAGCCCAGAGCCACCAAATCCTGGAACCTTGCCCTTATTTCCAACAGTTTTGAGAGCTCAGTTTTTGATCCGTTGGGCATCCGTCCAGATCTTTCTTCCGAATTAAGTAGTACGTGGGAAAATTTTCTTGGCTATTTTGGTCAAACATTTGATAGTGCTTCAAGCACAAAAAAAGATAAATCCCCCTCAGCTCGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCCTTGCCTGGAAAATTTCTACAGCTCTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATACCTCTTGGTGGAGTGAACCGGGAGGCTTTTGTTGGGAACTTGGATCAGAATAGCTTATTGAGCACTTTAGATTCCTTTTCTGGAGGAGGCATTGGTAGGCTGGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCGCTGCACAGGCATTCCAGGATGGTAACTATGTAGGATTGGTTGCTATCATGATATCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCGGAAAGGAAAATCCCCCTCAACTATGCCTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTGATGCCGATCATTTTCTCGACATCAACATTAGCCCTTCCGGGTACTCTAGCTCGCTTCACGGGGTTATCAGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAATTGGATCCCGATGATGTGAGTGAACAATTGAAGCGGCAGGGTGCTTCGATTCCCCTCGTCCGTCCAGGCAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACATTTGACGGCATTTCGAGGATTTGCGGGAACCTCTGTTCTTATACTTGTTGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATTTCCCAGAAGTACAAGAATATAGAGTTCTACGACATTGATAGGTATACTCCTTGA 1803 45.48 MARLSGGRCVAAMAKVGSVGDWVSWAQPPERWLTLPFGSACKEVRAIEVGVRAVVALSQLEAAAASSSPISFTLSTQSLTNSKRFLRPGISLTRASFSVPGKPRATKSWNLALISNSFESSVFDPLGIRPDLSSELSSTWENFLGYFGQTFDSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQAFQDGNYVGLVAIMISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24814942 24819823 - ClG42_06g0139000.10 Clacu06g1390 252038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1390 600 ProSitePatterns Protein secY signature 1. 242 261 IPR030659 -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 432 451 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 471 493 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 526 544 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 560 578 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 283 306 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 191 209 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 241 261 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 341 364 - -
Clacu06g1390 600 PRINTS Preprotein translocase SecY subunit signature 315 340 - -
Clacu06g1390 600 SUPERFAMILY Preprotein translocase SecY subunit 183 581 IPR023201 -
Clacu06g1390 600 Hamap Protein translocase subunit SecY [secY]. 179 591 IPR026593 -
Clacu06g1390 600 Pfam SecY 243 574 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Clacu06g1390 600 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 181 590 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Clacu06g1390 600 FunFam Preprotein translocase subunit SECY, chloroplastic 182 587 - -
Clacu06g1390 600 NCBIfam preprotein translocase subunit SecY 190 587 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Clacu06g1390 600 ProSitePatterns Protein secY signature 2. 334 351 IPR030659 -
Clacu06g1390 600 Gene3D SecY subunit domain 182 587 IPR023201 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1390 K10956 - csv:101222431 994.186