Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1404 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTCATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTATTCAGACGAAGCCACTCTCTACACCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTATGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1128 50.98 MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPIQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSMFLTDVQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24939069 24940292 - ClG42_06g0140400.10 Clacu06g1404 252052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1404 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Clacu06g1404 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 359 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Clacu06g1404 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Clacu06g1404 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Clacu06g1404 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Clacu06g1404 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Clacu06g1404 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
Clacu06g1404 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Clacu06g1404 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Clacu06g1404 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1404 Clacu-Chr6:24939069 Clacu08g0680 Clacu-Chr8:16220126 7.70E-10 dispersed
Clacu02g0865 Clacu-Chr2:10408766 Clacu06g1404 Clacu-Chr6:24939069 3.20E-06 transposed
Clacu05g2430 Clacu-Chr5:32537432 Clacu06g1404 Clacu-Chr6:24939069 2.80E-07 transposed
Clacu07g1540 Clacu-Chr7:30043779 Clacu06g1404 Clacu-Chr6:24939069 5.20E-06 transposed
Clacu07g1628 Clacu-Chr7:30865428 Clacu06g1404 Clacu-Chr6:24939069 4.10E-29 transposed
Clacu08g1548 Clacu-Chr8:25330386 Clacu06g1404 Clacu-Chr6:24939069 7.30E-68 transposed
Clacu11g1418 Clacu-Chr11:25084100 Clacu06g1404 Clacu-Chr6:24939069 7.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47911 PF00643 zf-B_box 6.70E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1404 - - - 0.0