Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1420 ATGCAGCAGAGGCAAACGAGGTATATGGAGAGGACGAACTCTATGAGGGAAAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGAGAAAACGACCAGCTCTAGCTAGTGTGATAGTAGAAGCTCTGAAGGTGGATAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCCAAGATAGGTCCTGCTAGAATTTCTGGAAGGTCTTCTCCTAAAAGGATTGAAGGTCCCGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTAGAAGGTGAACAGGGTGCAGCAATCCATGTTGTTCTGGTTGATGCCAACACAGGCCATGTAGTAACATCTGGACAGGAAGCCTTGTCTAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAATTCAGACTTGGGTTAAAGGTGGCTTCTGGGTTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAGCATTACCCACCTGCATTAAATGATGAGGTGTGGAGATTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAGCGGCTTAACAAAAATGGAATATTCTCTGTTGAAGACTTTCTCCGAATGGTCGTTCGTGATTCTCAAAAGTTGCGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCCTAGAACATGCTAAGACCTGTGTCCTGAGCGGGAAGCTGTATATTTATTATCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCTGATAGCCAGAAGGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGCAAGTCACTTTTGAGCTCTAAGCAGCCTAAGAAGTCCAATGCATCCCGAAACGACTTTCAAGGTGGTCATCTTGATATTTCTAGTACTCTAGATCACGGACCACTGCCCCGCATGCCAGTGTCAGTTCAGCATCAGCAGCCTGTAGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACTTCTCGACCACAGTTTGACAACTCTCCATTTACTTCTAATGACTTGATCGGCAATTCTAACCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCGCTCGGTTCCTCTATTCAGGAATCTAATCTGAATCCATTTGACTGGTCAAACAATAGGGACAAGGGAGTTGACGACTTCTTTTCGGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATGGGAGGGCATGCATCTGTTAACGTCCATGATGAGGGCTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGTTCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGAAAGAAAGCAGCTGAGAGACGTGCGCAGATTGTTGAGTTGGACGAGGAATAG 1917 43.4 MQQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARISGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGQEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKNGIFSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSNASRNDFQGGHLDISSTLDHGPLPRMPVSVQHQQPVVDSGLSVAGYNDNTATRYSTQPQFVNSTSRPQFDNSPFTSNDLIGNSNQVHITRNDNSAFGLALGPPQASSSGFQALGSSIQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHASVNVHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25081506 25087599 + ClG42_06g0142000.10 Clacu06g1420 252068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1420 638 PANTHER OS02G0177800 PROTEIN 16 629 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Clacu06g1420 638 Pfam Calmodulin binding protein-like N-terminal domain 97 244 IPR046831 -
Clacu06g1420 638 MobiDBLite consensus disorder prediction 394 421 - -
Clacu06g1420 638 Pfam Calmodulin binding protein C-terminal domain 327 389 IPR046829 -
Clacu06g1420 638 MobiDBLite consensus disorder prediction 1 29 - -
Clacu06g1420 638 MobiDBLite consensus disorder prediction 394 415 - -
Clacu06g1420 638 MobiDBLite consensus disorder prediction 10 29 - -
Clacu06g1420 638 Pfam Calmodulin binding protein central domain 256 322 IPR046830 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1157 Clacu-Chr4:25733561 Clacu06g1420 Clacu-Chr6:25081506 8.50E-84 dispersed
Clacu04g1158 Clacu-Chr4:25764421 Clacu06g1420 Clacu-Chr6:25081506 8.30E-88 dispersed
Clacu06g1420 Clacu-Chr6:25081506 Clacu06g1782 Clacu-Chr6:28333494 1.90E-93 dispersed
Clacu06g1420 Clacu-Chr6:25081506 Clacu02g1557 Clacu-Chr2:28951642 4.60E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1420 - - - 0.0