Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1429 ATGGCGGCCGACGACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCGCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCGACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGACCGCCGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACCCCGGCGAACCCATTCTTCACGCCGGCGGAAATTGCAAAACAAGCGATGTCATCCGGCGCCAAACTTATCATAACCCAAGCAGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGAGGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTATTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGCCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGTTTTACTCGCAGCTAGTATTCCTAATTAA 1656 49.03 MAADDDSSPEFIFRSKLPDIAIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVTAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPAEIAKQAMSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDEVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLPHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRVLLAASIPN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25156681 25160725 - ClG42_06g0142900.10 Clacu06g1429 252077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1429 551 Gene3D - 446 547 IPR045851 -
Clacu06g1429 551 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Clacu06g1429 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 446 - -
Clacu06g1429 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Clacu06g1429 551 Gene3D - 3 445 IPR042099 -
Clacu06g1429 551 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Clacu06g1429 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 542 - GO:0016405(PANTHER)
Clacu06g1429 551 Pfam AMP-binding enzyme 37 409 IPR000873 -
Clacu06g1429 551 SUPERFAMILY Acetyl-CoA synthetase-like 11 547 - -
Clacu06g1429 551 CDD 4CL 22 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1429 Clacu-Chr6:25156681 Clacu10g1274 Clacu-Chr10:25579120 2.40E-209 dispersed
Clacu01g0283 Clacu-Chr1:2824237 Clacu06g1429 Clacu-Chr6:25156681 3.20E-51 transposed
Clacu01g0795 Clacu-Chr1:8635096 Clacu06g1429 Clacu-Chr6:25156681 7.80E-22 transposed
Clacu05g1379 Clacu-Chr5:15187599 Clacu06g1429 Clacu-Chr6:25156681 1.50E-23 transposed
Clacu05g1675 Clacu-Chr5:25327764 Clacu06g1429 Clacu-Chr6:25156681 1.30E-98 transposed
Clacu05g2330 Clacu-Chr5:31659431 Clacu06g1429 Clacu-Chr6:25156681 1.70E-93 transposed
Clacu07g0214 Clacu-Chr7:2498885 Clacu06g1429 Clacu-Chr6:25156681 1.60E-91 transposed
Clacu07g0387 Clacu-Chr7:4421303 Clacu06g1429 Clacu-Chr6:25156681 2.20E-15 transposed
Clacu11g1447 Clacu-Chr11:25488769 Clacu06g1429 Clacu-Chr6:25156681 5.60E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1429 K01904 - csv:101218077 882.478