Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1443 ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACTAACTTTGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGAGTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCATTGTCAACCGCAACTTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATATTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATATTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATAACCGACTTAGCATCTAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1452 48.62 MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSESAASDGGSRSAEERDVHHSPPLSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDIPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25303807 25307723 + ClG42_06g0144300.10 Clacu06g1443 252091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1443 483 MobiDBLite consensus disorder prediction 311 331 - -
Clacu06g1443 483 SUPERFAMILY DNA-binding domain 237 298 IPR016177 GO:0003677(InterPro)
Clacu06g1443 483 CDD AP2 135 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 Pfam AP2 domain 239 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 Pfam AP2 domain 137 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 Gene3D AP2/ERF domain 238 298 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 Gene3D AP2/ERF domain 136 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 MobiDBLite consensus disorder prediction 101 126 - -
Clacu06g1443 483 FunFam AP2-like ethylene-responsive transcription factor ANT 135 204 - -
Clacu06g1443 483 FunFam AP2-like ethylene-responsive transcription factor 237 298 - -
Clacu06g1443 483 ProSiteProfiles AP2/ERF domain profile. 136 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 CDD AP2 237 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 SUPERFAMILY DNA-binding domain 135 204 IPR016177 GO:0003677(InterPro)
Clacu06g1443 483 SMART rav1_2 238 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 SMART rav1_2 136 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 MobiDBLite consensus disorder prediction 311 369 - -
Clacu06g1443 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 362 - -
Clacu06g1443 483 MobiDBLite consensus disorder prediction 47 70 - -
Clacu06g1443 483 MobiDBLite consensus disorder prediction 347 369 - -
Clacu06g1443 483 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 ProSiteProfiles AP2/ERF domain profile. 238 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu06g1443 483 MobiDBLite consensus disorder prediction 85 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2399 Clacu-Chr5:32311312 Clacu06g1443 Clacu-Chr6:25303807 2.40E-68 dispersed
Clacu06g1443 Clacu-Chr6:25303807 Clacu11g0957 Clacu-Chr11:10166870 3.30E-98 dispersed
Clacu06g1443 Clacu-Chr6:25303807 Clacu01g1849 Clacu-Chr1:30619421 4.50E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47915 PF00847 AP2 3.50E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1443 K09285 - csv:101210453 686.026