Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu06g1450 | ATGGCGGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCACAACTCAAGAAGGAGAAGACAGACTTCAATTATTTGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTAAAGTTTTTGGGGTTCATGTGGAATCCCTTATCATGGGTCATGGAAGCTGCAGCCATTATGGCAATTGCTTTGGCTAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTAGGAATTATATGTTTATTGGTGATTAACTCCACAATCAGTTTCATTGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAGACTAAGGTGCTGAGGGATGGCAAATGGAGTGAGCAGGATGCAGCAATTTTGGTTCCAGGAGATATAATTAGTGTAAAGTTGGGAGATATTATCCCGGCGGATGCTCGGCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAAAATCCAGGGGATGAAATCTTCTCTGGTTCAACTTGCAAACAAGGGGAAATTGAAGCTGTTGTAATTGCTACGGGTGTCCATACTTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACTCACCAAGTTGGTCACTTCCAAAAAGTGCTTACATCCATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGTTTATTGAGATTATTGTAATGTACCCAATTCAACGTCGTAAATACCGTGACGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCAATTGCTATGCCTACTGTCCTGTCTGTCACAATGGCTATTGGATCTCATAAGCTATCCCAACAGGGTGCCATCACGAAGCGTATGACTGCCATTGAAGAATTGGCGGGTATGGATGTCCTTTGCAGTGATAAAACAGGGACATTGACTCTAAACAAGCTTAGTGTTGATGTAAATTTGGTTGAGGTTTTTGCTAAGGGTGTGGATAAACAACATGTCATTTTGCTGGCTGCAAGAGCTTCTCGAATCGAAAATCAAGATGCAATTGATACTGCTATTGTAGGAATGCTAGCTGATCCTAAAGAGGCACGAGCAGACATCAGAGAAGTGCATTTCTTCCCATTCAATCCAGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCCGAGCAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAGGAAGAGGGCTCATTCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGTTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTGTTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTTAATCTAGGAGTGAACGTCAAGATGATTACTGGTGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCCGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTAGAAGAGTTAATTGAAAAGGCAGATGGCTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAGGAAGCTGCAGGAGAGGAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATTGCAGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACCATATATGCAGTTTCAATCACAATACGTATCGTGTTTGGCTTCTTGTTTATTGCCCTCATATGGAAATTTGACTTCTCCCCATTCATGGTTTTGATCATTGCCATTCTAAATGATGGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTATCATATTCTTCTGGGTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTGCAAGTGAGTATTGTCAGCCAGGCCTTGATATTTGTGACTCGATCGCGCAGTTGGTCCTACGTAGAACGACCGGGGTTGCTACTGATGGGTGCTTTCGTTATTGCACAACTGGTAGCAACACTCATAGCAGTATATGCCAATTGGGGATTTGCAAAGATAAAAGGGGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTATAGTATTATTTTCTACATTCCATTAGACTTGATCAAGTTTGCAATTCGCTATATCCTCAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAGAACTAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCGGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGCTTAGGGAGCTGAATACTCTGAAGGGTCATGTTGAATCAGTAGTGAAATTGAAAGGGCTGGATATTGATACAATCCAACAACATTACACAGTGTAA | 2862 | 42.87 | MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLTTQEGEDRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMFIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDVNLVEVFAKGVDKQHVILLAARASRIENQDAIDTAIVGMLADPKEARADIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVRKRAHSVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTIIFFWVMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFVIAQLVATLIAVYANWGFAKIKGAGWGWAGVVWIYSIIFYIPLDLIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV | 953 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 25395763 | 25402978 | + | ClG42_06g0145000.10 | Clacu06g1450 | 252098 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu06g1450 | 953 | SUPERFAMILY | HAD-like | 326 | 636 | IPR036412 | - | |
| Clacu06g1450 | 953 | Gene3D | - | 133 | 217 | - | - | |
| Clacu06g1450 | 953 | FunFam | Plasma membrane ATPase | 342 | 489 | - | - | |
| Clacu06g1450 | 953 | Gene3D | - | 327 | 626 | IPR023214 | - | |
| Clacu06g1450 | 953 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
| Clacu06g1450 | 953 | SFLD | p-type atpase | 312 | 640 | IPR044492 | - | |
| Clacu06g1450 | 953 | Gene3D | - | 95 | 816 | - | - | |
| Clacu06g1450 | 953 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 35 | 807 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Clacu06g1450 | 953 | Coils | Coil | 904 | 924 | - | - | |
| Clacu06g1450 | 953 | FunFam | ATPase 4 plasma membrane-type | 574 | 816 | - | - | |
| Clacu06g1450 | 953 | SFLD | C1.7: P-type atpase like | 312 | 640 | - | - | |
| Clacu06g1450 | 953 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 848 | IPR023298 | - | |
| Clacu06g1450 | 953 | Gene3D | - | 902 | 953 | - | - | |
| Clacu06g1450 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 589 | 605 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 446 | 464 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 620 | 645 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 761 | 782 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 561 | 577 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 603 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 589 | 608 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 612 | 624 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 516 | - | - | |
| Clacu06g1450 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 495 | - | - | |
| Clacu06g1450 | 953 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - | |
| Clacu06g1450 | 953 | NCBIfam | HAD-IC family P-type ATPase | 564 | 678 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | NCBIfam | HAD-IC family P-type ATPase | 102 | 345 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu06g1450 | 953 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
| Clacu06g1450 | 953 | Pfam | E1-E2 ATPase | 132 | 309 | - | - | |
| Clacu06g1450 | 953 | CDD | P-type_ATPase_H | 35 | 842 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Clacu06g1450 | 953 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 18 | 876 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Clacu06g1450 | 953 | FunFam | Plasma membrane ATPase | 133 | 217 | - | - | |
| Clacu06g1450 | 953 | FunFam | Plasma membrane ATPase | 482 | 637 | - | - | |
| Clacu06g1450 | 953 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - | |
| Clacu06g1450 | 953 | Gene3D | - | 342 | 489 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu06g1450 | Clacu-Chr6:25395763 | Clacu08g1422 | Clacu-Chr8:24284781 | 0.00E+00 | dispersed | |
| Clacu06g1450 | Clacu-Chr6:25395763 | Clacu06g1458 | Clacu-Chr6:25504843 | 1.60E-19 | proximal | |
| Clacu11g1388 | Clacu-Chr11:24399862 | Clacu06g1450 | Clacu-Chr6:25395763 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu06g1450 | K01535 | - | csv:101221783 | 1762.66 |