Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1450 ATGGCGGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCACAACTCAAGAAGGAGAAGACAGACTTCAATTATTTGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTAAAGTTTTTGGGGTTCATGTGGAATCCCTTATCATGGGTCATGGAAGCTGCAGCCATTATGGCAATTGCTTTGGCTAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTAGGAATTATATGTTTATTGGTGATTAACTCCACAATCAGTTTCATTGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAGACTAAGGTGCTGAGGGATGGCAAATGGAGTGAGCAGGATGCAGCAATTTTGGTTCCAGGAGATATAATTAGTGTAAAGTTGGGAGATATTATCCCGGCGGATGCTCGGCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAAAATCCAGGGGATGAAATCTTCTCTGGTTCAACTTGCAAACAAGGGGAAATTGAAGCTGTTGTAATTGCTACGGGTGTCCATACTTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACTCACCAAGTTGGTCACTTCCAAAAAGTGCTTACATCCATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGTTTATTGAGATTATTGTAATGTACCCAATTCAACGTCGTAAATACCGTGACGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCAATTGCTATGCCTACTGTCCTGTCTGTCACAATGGCTATTGGATCTCATAAGCTATCCCAACAGGGTGCCATCACGAAGCGTATGACTGCCATTGAAGAATTGGCGGGTATGGATGTCCTTTGCAGTGATAAAACAGGGACATTGACTCTAAACAAGCTTAGTGTTGATGTAAATTTGGTTGAGGTTTTTGCTAAGGGTGTGGATAAACAACATGTCATTTTGCTGGCTGCAAGAGCTTCTCGAATCGAAAATCAAGATGCAATTGATACTGCTATTGTAGGAATGCTAGCTGATCCTAAAGAGGCACGAGCAGACATCAGAGAAGTGCATTTCTTCCCATTCAATCCAGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCCGAGCAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAGGAAGAGGGCTCATTCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGTTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTGTTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTTAATCTAGGAGTGAACGTCAAGATGATTACTGGTGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCCGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTAGAAGAGTTAATTGAAAAGGCAGATGGCTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAGGAAGCTGCAGGAGAGGAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATTGCAGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACCATATATGCAGTTTCAATCACAATACGTATCGTGTTTGGCTTCTTGTTTATTGCCCTCATATGGAAATTTGACTTCTCCCCATTCATGGTTTTGATCATTGCCATTCTAAATGATGGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTATCATATTCTTCTGGGTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTGCAAGTGAGTATTGTCAGCCAGGCCTTGATATTTGTGACTCGATCGCGCAGTTGGTCCTACGTAGAACGACCGGGGTTGCTACTGATGGGTGCTTTCGTTATTGCACAACTGGTAGCAACACTCATAGCAGTATATGCCAATTGGGGATTTGCAAAGATAAAAGGGGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTATAGTATTATTTTCTACATTCCATTAGACTTGATCAAGTTTGCAATTCGCTATATCCTCAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAGAACTAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCGGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGCTTAGGGAGCTGAATACTCTGAAGGGTCATGTTGAATCAGTAGTGAAATTGAAAGGGCTGGATATTGATACAATCCAACAACATTACACAGTGTAA 2862 42.87 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLTTQEGEDRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMFIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDVNLVEVFAKGVDKQHVILLAARASRIENQDAIDTAIVGMLADPKEARADIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVRKRAHSVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTIIFFWVMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFVIAQLVATLIAVYANWGFAKIKGAGWGWAGVVWIYSIIFYIPLDLIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 953
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 25395763 25402978 + ClG42_06g0145000.10 Clacu06g1450 252098
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1450 953 SUPERFAMILY HAD-like 326 636 IPR036412 -
Clacu06g1450 953 Gene3D - 133 217 - -
Clacu06g1450 953 FunFam Plasma membrane ATPase 342 489 - -
Clacu06g1450 953 Gene3D - 327 626 IPR023214 -
Clacu06g1450 953 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Clacu06g1450 953 SFLD p-type atpase 312 640 IPR044492 -
Clacu06g1450 953 Gene3D - 95 816 - -
Clacu06g1450 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu06g1450 953 Coils Coil 904 924 - -
Clacu06g1450 953 FunFam ATPase 4 plasma membrane-type 574 816 - -
Clacu06g1450 953 SFLD C1.7: P-type atpase like 312 640 - -
Clacu06g1450 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 848 IPR023298 -
Clacu06g1450 953 Gene3D - 902 953 - -
Clacu06g1450 953 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Clacu06g1450 953 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Clacu06g1450 953 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Clacu06g1450 953 NCBIfam HAD-IC family P-type ATPase 564 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 NCBIfam HAD-IC family P-type ATPase 102 345 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1450 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Clacu06g1450 953 Pfam E1-E2 ATPase 132 309 - -
Clacu06g1450 953 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Clacu06g1450 953 PANTHER CALCIUM-TRANSPORTING ATPASE 18 876 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Clacu06g1450 953 FunFam Plasma membrane ATPase 133 217 - -
Clacu06g1450 953 FunFam Plasma membrane ATPase 482 637 - -
Clacu06g1450 953 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Clacu06g1450 953 Gene3D - 342 489 IPR023299 GO:0000166(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1450 Clacu-Chr6:25395763 Clacu08g1422 Clacu-Chr8:24284781 0.00E+00 dispersed
Clacu06g1450 Clacu-Chr6:25395763 Clacu06g1458 Clacu-Chr6:25504843 1.60E-19 proximal
Clacu11g1388 Clacu-Chr11:24399862 Clacu06g1450 Clacu-Chr6:25395763 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1450 K01535 - csv:101221783 1762.66