Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1458 ATGGCGGCCGGAGAAGAGGAGATGGCGGCGGCGGCAGCGGCGTCGGGAGTGGCCGGAAAGAAGGGTGGTGGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTAGCTACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTACGCGGTGGCGAGTGGCATGTTGCTGCTGCTGTCGTTGCTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCACACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAACTGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGACATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCATCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTTATGGGAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCGAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACAGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTTGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCAATTGCTCCTAGGATTGCTATACTCGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCATCACCATCACCATCACCATGAGCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAGTTCAAGTTTATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGGGTGCAACACTGACAGCTCCGACTCTTCTAGTCATCATCACCACCACCACCATCATCATCATGAGCACGAAGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAGACTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAATCTGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAACAAACATCACTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGTTCTGCTGTCATTCTTGAGCTCCATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAGTGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCACTGCCACCAAGGAAGCTTCGACACTTCTGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAATCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGTTCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAATGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCCAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAATGAAATTATTATAGAATAG 3639 44.71 MAAGEEEMAAAAAASGVAGKKGGGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGNCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPIALRLPNHRHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVYGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSATHCSSKHKCCDVSSHSDEYSGHTHDRCDNHSSHSSRHRHHHHHHHHEHEDCTSLKKTHDGCLPQNHASKCVSRLKSSSLCKKSKLVDSSSKVDGSTGNVNLCEHDHGCNTDSSDSSSHHHHHHHHHHEHEDCGSLKKTHEGCLPQNCASKCDSGMKTSSSCKKSKLVESSSKVDDSAGSLNLCEHGHVHNDQPADHDHHAYSSCAHHVENKHHSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELHESGCCSHNDQSAQHDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKSISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGVHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCKSCKRGSSQLQIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25504843 25511239 + ClG42_06g0145800.10 Clacu06g1458 252106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1458 1212 NCBIfam HAD-IC family P-type ATPase 183 688 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu06g1458 1212 ProSitePatterns Anaphylatoxin domain signature. 1158 1192 IPR000020 GO:0005576(InterPro)
Clacu06g1458 1212 Pfam E1-E2 ATPase 219 388 - -
Clacu06g1458 1212 FunFam Putative cadmium/zinc-transporting ATPase 3 22 95 - -
Clacu06g1458 1212 Pfam haloacid dehalogenase-like hydrolase 405 624 - -
Clacu06g1458 1212 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 25 909 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Clacu06g1458 1212 SUPERFAMILY HAD-like 409 711 IPR036412 -
Clacu06g1458 1212 SFLD p-type atpase 392 662 IPR044492 -
Clacu06g1458 1212 SFLD Haloacid Dehalogenase 392 662 - -
Clacu06g1458 1212 SUPERFAMILY Calcium ATPase, transduction domain A 223 308 IPR008250 -
Clacu06g1458 1212 SUPERFAMILY HMA, heavy metal-associated domain 23 97 IPR036163 GO:0046872(InterPro)
Clacu06g1458 1212 CDD P-type_ATPase_HM 110 712 - -
Clacu06g1458 1212 Gene3D - 24 95 - -
Clacu06g1458 1212 PRINTS P-type cation-transporting ATPase superfamily signature 610 629 - -
Clacu06g1458 1212 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Clacu06g1458 1212 PRINTS P-type cation-transporting ATPase superfamily signature 556 566 - -
Clacu06g1458 1212 PRINTS P-type cation-transporting ATPase superfamily signature 409 423 - -
Clacu06g1458 1212 PRINTS P-type cation-transporting ATPase superfamily signature 634 646 - -
Clacu06g1458 1212 ProSitePatterns E1-E2 ATPases phosphorylation site. 411 417 IPR018303 -
Clacu06g1458 1212 ProSitePatterns Hypothetical cof family signature 2. 610 632 - -
Clacu06g1458 1212 NCBIfam cadmium family heavy metal-translocating P-type ATPase 160 503 - -
Clacu06g1458 1212 FunFam Copper-transporting ATPase 1, putative 198 312 - -
Clacu06g1458 1212 ProSiteProfiles Heavy-metal-associated domain profile. 26 92 IPR006121 GO:0046872(InterPro)
Clacu06g1458 1212 MobiDBLite consensus disorder prediction 1000 1028 - -
Clacu06g1458 1212 FunFam Putative cadmium/zinc-transporting ATPase 3 420 542 - -
Clacu06g1458 1212 Gene3D - 420 542 IPR023299 GO:0000166(InterPro)
Clacu06g1458 1212 Gene3D - 400 661 IPR023214 -
Clacu06g1458 1212 NCBIfam heavy metal translocating P-type ATPase 160 713 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Clacu06g1458 1212 SUPERFAMILY Calcium ATPase, transmembrane domain M 160 403 IPR023298 -
Clacu06g1458 1212 Gene3D - 198 312 - -
Clacu06g1458 1212 MobiDBLite consensus disorder prediction 1000 1017 - -
Clacu06g1458 1212 MobiDBLite consensus disorder prediction 751 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1268 Clacu-Chr2:25328539 Clacu06g1458 Clacu-Chr6:25504843 1.40E-67 dispersed
Clacu06g1458 Clacu-Chr6:25504843 Clacu10g0933 Clacu-Chr10:19299592 1.70E-58 dispersed
Clacu06g1450 Clacu-Chr6:25395763 Clacu06g1458 Clacu-Chr6:25504843 1.60E-19 proximal
Clacu02g0776 Clacu-Chr2:8580903 Clacu06g1458 Clacu-Chr6:25504843 9.30E-56 transposed
Clacu02g0837 Clacu-Chr2:9848786 Clacu06g1458 Clacu-Chr6:25504843 5.20E-51 transposed
Clacu11g1379 Clacu-Chr11:24253340 Clacu06g1458 Clacu-Chr6:25504843 6.70E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1458 K01534 - gmx:100817567 1078.16