Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1466 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCTGTCATCAACTAATATGAAAGGAGATGCAGAAAATGTTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAGCAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGGGCAAGCCAATCCGAGAACCTGAGTAGGCTGCATTGCACACATGTGGAAAATGATCTGACCTTTTGTTGTTATGTGGGTTCTCCCCCCCACATAACTATTTACTACAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCGTTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGCGAGTGCAAGATGGACATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAAGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTTCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATTAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGTTTTACGCCGGTAAGGGAATAGCTATGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAAAAGATGTTACGGCACTTGAATACTATCAAGCAGTTCTCACCATATCAAGGTTTGTGTTCTGTATCCTCTGTAAGGTTCTGCACATCACTTCTGCTCTTGGCCTCATCCAATTTCCGTCTTTTGGAAGCTAA 2448 41.14 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSLSSTNMKGDAENVEPVVKKNQQRKRRKSKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQRASQSENLSRLHCTHVENDLTFCCYVGSPPHITIYYSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMDILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTFNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKFYAGKGIAMTFSKRKRDKKPAEKDVTALEYYQAVLTISRFVFCILCKVLHITSALGLIQFPSFGS 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25591954 25600655 + ClG42_06g0146600.10 Clacu06g1466 252114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1466 815 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 30 747 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Clacu06g1466 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 324 IPR013083 -
Clacu06g1466 815 Pfam Homeodomain 542 586 IPR001356 GO:0003677(InterPro)
Clacu06g1466 815 ProSiteProfiles 'Homeobox' domain profile. 531 591 IPR001356 GO:0003677(InterPro)
Clacu06g1466 815 MobiDBLite consensus disorder prediction 386 408 - -
Clacu06g1466 815 SUPERFAMILY FYVE/PHD zinc finger 266 332 IPR011011 -
Clacu06g1466 815 CDD PHD_PRHA_like 275 327 IPR045876 -
Clacu06g1466 815 MobiDBLite consensus disorder prediction 38 74 - -
Clacu06g1466 815 SUPERFAMILY Homeodomain-like 534 597 IPR009057 -
Clacu06g1466 815 FunFam pathogenesis-related homeodomain protein-like 267 327 - -
Clacu06g1466 815 CDD homeodomain 539 592 IPR001356 GO:0003677(InterPro)
Clacu06g1466 815 Pfam PHD-finger 276 327 IPR019787 -
Clacu06g1466 815 SMART HOX_1 533 595 IPR001356 GO:0003677(InterPro)
Clacu06g1466 815 ProSitePatterns Zinc finger PHD-type signature. 276 327 IPR019786 -
Clacu06g1466 815 MobiDBLite consensus disorder prediction 478 498 - -
Clacu06g1466 815 FunFam pathogenesis-related homeodomain protein 533 597 - -
Clacu06g1466 815 Gene3D - 533 604 - -
Clacu06g1466 815 MobiDBLite consensus disorder prediction 592 611 - -
Clacu06g1466 815 MobiDBLite consensus disorder prediction 366 421 - -
Clacu06g1466 815 MobiDBLite consensus disorder prediction 110 148 - -
Clacu06g1466 815 ProSiteProfiles Zinc finger PHD-type profile. 273 330 IPR019787 -
Clacu06g1466 815 SMART PHD_3 275 328 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1200 Clacu-Chr5:11054514 Clacu06g1466 Clacu-Chr6:25591954 2.10E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47916 PF00628 PHD 1.30E-09 CL0390 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1466 - - - 0.0