Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu06g1470 ATGGATAGTATCGGAGAGGATTACTTTAATTCCTTTGGAGCTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTCGAAGAAGATAGCAGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.5 MDSIGEDYFNSFGADIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKSKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 25641482 25645471 - ClG42_06g0147000.10 Clacu06g1470 252118
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu06g1470 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 116 - -
Clacu06g1470 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Clacu06g1470 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Clacu06g1470 245 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Clacu06g1470 245 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Clacu06g1470 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu06g1470 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1470 Clacu-Chr6:25641482 Clacu10g0081 Clacu-Chr10:1089995 4.10E-12 dispersed
Clacu05g2734 Clacu-Chr5:34837709 Clacu06g1470 Clacu-Chr6:25641482 3.50E-18 transposed
Clacu11g1359 Clacu-Chr11:23576940 Clacu06g1470 Clacu-Chr6:25641482 1.50E-59 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47918 PF00010 HLH 1.60E-11 No_clan Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu06g1470 - - - 0.0